[←][→] ath   At2g31970 Gene
functional annotation
Function   DNA repair-recombination protein (RAD50)      
GO BP
GO:0016233 [list] [network] telomere capping  (3 genes)  IMP  
GO:0006312 [list] [network] mitotic recombination  (5 genes)  IMP  
GO:0000723 [list] [network] telomere maintenance  (21 genes)  IMP  
GO:0006302 [list] [network] double-strand break repair  (62 genes)  IMP  
GO CC
GO:0030870 [list] [network] Mre11 complex  (1 genes)  TAS  
GO:0005634 [list] [network] nucleus  (10305 genes)  IDA ISM  
GO:0005737 [list] [network] cytoplasm  (13880 genes)  IDA  
GO MF
GO:0140664 [list] [network] ATP-dependent DNA damage sensor activity  (11 genes)  IEA  
GO:0016887 [list] [network] ATP hydrolysis activity  (115 genes)  IEA  
GO:0005515 [list] [network] protein binding  (5066 genes)  IPI  
KEGG ath03440 [list] [network] Homologous recombination (60 genes)
ath03450 [list] [network] Non-homologous end-joining (8 genes)
Protein NP_565733.1 
BLAST NP_565733.1 
Orthologous [Ortholog page] LOC4329409 (osa)  LOC7495838 (ppo)  LOC11435676 (mtr)  LOC100818545 (gma)  LOC101256382 (sly)  LOC103857408 (bra)  LOC123102504 (tae)  LOC123110672 (tae)  LOC123119676 (tae)  LOC123399737 (hvu) 
Subcellular
localization
wolf
cyto 5,  nucl 2,  mito 1,  vacu 1,  E.R. 1,  golg 1,  E.R._vacu 1  (predict for NP_565733.1)
Subcellular
localization
TargetP
other 8  (predict for NP_565733.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03013 Nucleocytoplasmic transport 4
ath03020 RNA polymerase 2
ath03450 Non-homologous end-joining 2
Genes directly connected with RAD50 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
11.9 AT1G67120 midasin-like protein [detail] 843032
10.9 NUA nuclear pore anchor [detail] 844268
9.5 CIP4.1 COP1-interacting protein 4.1 [detail] 827980
8.3 PMS1 DNA mismatch repair protein [detail] 827997
8.1 NRPC1 nuclear RNA polymerase C1 [detail] 836126
8.0 GLE1 nucleoporin GLE1-like protein [detail] 837869
6.1 ATLIG4 DNA ligase IV [detail] 835822
5.6 AT1G45231 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [detail] 841092
Coexpressed
gene list		 [Coexpressed gene list for RAD50]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
265678_at
265678_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
265678_at
265678_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
265678_at
265678_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 817756      
Refseq ID (protein) NP_565733.1 


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