[←][→] ath   At2g39260 Gene
functional annotation
Function   regulator of nonsense transcripts UPF2      
GO BP
GO:0000184 [list] [network] nuclear-transcribed mRNA catabolic process, nonsense-mediated decay  (7 genes)  IMP  
GO:0048571 [list] [network] long-day photoperiodism  (29 genes)  IMP  
GO:0009863 [list] [network] salicylic acid mediated signaling pathway  (77 genes)  IMP  
GO:0009867 [list] [network] jasmonic acid mediated signaling pathway  (147 genes)  IMP  
GO:0009611 [list] [network] response to wounding  (816 genes)  IMP  
GO:0042742 [list] [network] defense response to bacterium  (980 genes)  IMP  
GO CC
GO:0005730 [list] [network] nucleolus  (387 genes)  IDA  
GO:0005737 [list] [network] cytoplasm  (13880 genes)  IDA ISM  
GO MF
GO:0003729 [list] [network] mRNA binding  (1535 genes)  HDA  
GO:0005515 [list] [network] protein binding  (5066 genes)  IPI  
KEGG ath03013 [list] [network] Nucleocytoplasmic transport (103 genes)
ath03015 [list] [network] mRNA surveillance pathway (119 genes)
Protein NP_181459.4 
BLAST NP_181459.4 
Orthologous [Ortholog page] LOC4330058 (osa)  LOC7458633 (ppo)  LOC7469776 (ppo)  LOC11422854 (mtr)  LOC100786092 (gma)  LOC100795746 (gma)  LOC101253276 (sly)  LOC103857854 (bra)  LOC123046082 (tae)  LOC123053966 (tae)  LOC123137553 (tae)  LOC123144893 (tae)  LOC123189860 (tae)  LOC123404355 (hvu)  LOC123427274 (hvu) 
Subcellular
localization
wolf
nucl 5,  cyto 4,  chlo 1,  vacu 1  (predict for NP_181459.4)
Subcellular
localization
TargetP
other 9  (predict for NP_181459.4)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03250 Viral life cycle - HIV-1 2
ath04120 Ubiquitin mediated proteolysis 2
ath03015 mRNA surveillance pathway 2
ath03013 Nucleocytoplasmic transport 2
Genes directly connected with AT2G39260 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
9.6 GTB1 global transcription factor group B1 [detail] 842855
9.6 GTA2 global transcription factor group A2 [detail] 826391
9.5 emb1579 ATP/GTP-binding protein family [detail] 814844
9.4 HB-1 homeobox-1 [detail] 839740
9.3 emb1441 zinc knuckle (CCHC-type) family protein [detail] 835056
9.1 ATRX P-loop containing nucleoside triphosphate hydrolases superfamily protein [detail] 837382
8.2 CUL3B cullin 3B [detail] 843303
8.1 AT3G51650 stress response NST1-like protein [detail] 824328
7.6 AT4G11560 bromo-adjacent homology (BAH) domain-containing protein [detail] 826760
7.5 SCC3 sister-chromatid cohesion protein 3 [detail] 819410
7.5 AT1G07990 SIT4 phosphatase-associated family protein [detail] 837314
7.4 AT3G51640 stress response NST1-like protein [detail] 824327
6.5 AT3G53390 Transducin/WD40 repeat-like superfamily protein [detail] 824507
6.2 ftsh7 FTSH protease 7 [detail] 823859
Coexpressed
gene list		 [Coexpressed gene list for AT2G39260]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
267009_at
267009_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
267009_at
267009_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
267009_at
267009_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 818511      
Refseq ID (protein) NP_181459.4 


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