[←][→] ath   AT2G40030 Gene
functional annotation
Function   nuclear RNA polymerase D1B  
GO BP
GO:0030422 [list] [network] production of siRNA involved in RNA interference  (34 genes)  IGI IMP  
GO:0006306 [list] [network] DNA methylation  (50 genes)  IMP  
GO:0035194 [list] [network] posttranscriptional gene silencing by RNA  (130 genes)  IMP  
GO:0050832 [list] [network] defense response to fungus  (517 genes)  IMP  
GO CC
GO:0000418 [list] [network] RNA polymerase IV complex  (15 genes)  IPI  
GO:0000419 [list] [network] RNA polymerase V complex  (21 genes)  IDA IPI  
GO:0005666 [list] [network] RNA polymerase III complex  (23 genes)  IBA  
GO:0030880 [list] [network] RNA polymerase complex  (113 genes)  IPI  
GO:0016604 [list] [network] nuclear body  (115 genes)  IDA  
GO:0005730 [list] [network] nucleolus  (477 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10793 genes)  IDA ISM  
GO MF
GO:0001056 [list] [network] RNA polymerase III activity  (24 genes)  IBA  
GO:0003899 [list] [network] DNA-directed 5'-3' RNA polymerase activity  (59 genes)  IBA ISS  
GO:0003677 [list] [network] DNA binding  (2280 genes)  IEA  
GO:0046872 [list] [network] metal ion binding  (3180 genes)  IEA  
GO:0005515 [list] [network] protein binding  (4605 genes)  IPI  
KEGG
Protein NP_001323985.1  NP_181532.2 
BLAST NP_001323985.1  NP_181532.2 
Orthologous [Ortholog page] LOC778258 (sly)  LOC4328330 (osa)  LOC11445115 (mtr)  LOC100266900 (vvi)  LOC100785844 (gma)  LOC100801412 (gma)  LOC103654914 (zma)  LOC103857900 (bra) 
Subcellular
localization
wolf
nucl 10  (predict for NP_001323985.1)
nucl 10  (predict for NP_181532.2)
Subcellular
localization
TargetP
other 7  (predict for NP_001323985.1)
other 7  (predict for NP_181532.2)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04120 Ubiquitin mediated proteolysis 2
Genes directly connected with NRPD1B on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
8.3 AGO4 Argonaute family protein [detail] 817246
6.8 AT4G36080 phosphotransferases/inositol or phosphatidylinositol kinase [detail] 829764
6.8 SYD P-loop containing nucleoside triphosphate hydrolases superfamily protein [detail] 817375
6.7 AT3G20010 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein [detail] 821539
6.4 DCL3 dicer-like 3 [detail] 823508
6.4 NRPD2A nuclear RNA polymerase D2A [detail] 821960
4.7 DML1 demeter-like 1 [detail] 818224
Coexpressed
gene list		 [Coexpressed gene list for NRPD1B]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
267351_at
267351_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
267351_at
267351_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
267351_at
267351_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 818591      
Refseq ID (protein) NP_001323985.1 
NP_181532.2 


The preparation time of this page was 1.5 [sec].