[←][→] ath   AT3G01270 Gene
functional annotation
Function   Pectate lyase family protein  
GO BP
GO:0045490 [list] [network] pectin catabolic process  (96 genes)  IEA  
GO CC
GO:0005576 [list] [network] extracellular region  (3363 genes)  ISM  
GO MF
GO:0030570 [list] [network] pectate lyase activity  (24 genes)  IEA  
GO:0016829 [list] [network] lyase activity  (412 genes)  ISS  
GO:0046872 [list] [network] metal ion binding  (3180 genes)  IEA  
KEGG ath00040 [list] [network] Pentose and glucuronate interconversions (96 genes)
Protein NP_186776.1 
BLAST NP_186776.1 
Orthologous [Ortholog page] LOC542245 (zma)  AT2G02720 (ath)  AT5G15110 (ath)  AT59 (ath)  LOC4328714 (osa)  LOC4340099 (osa)  LOC4340103 (osa)  LOC4340105 (osa)  LOC4341389 (osa)  LOC7457856 (ppo)  LOC7472610 (ppo)  LOC7495953 (ppo)  LOC11406962 (mtr)  LOC11416043 (mtr)  LOC11438708 (mtr)  LOC25495277 (mtr)  LOC25502784 (mtr)  LOC100254377 (vvi)  LOC100257069 (vvi)  LOC100262177 (vvi)  LOC100267345 (vvi)  LOC100284055 (zma)  LOC100284356 (zma)  LOC100780236 (gma)  LOC100785801 (gma)  LOC100796307 (gma)  LOC100798579 (gma)  LOC100801864 (gma)  LOC100810615 (gma)  LOC100810857 (gma)  LOC101246909 (sly)  LOC101249735 (sly)  LOC101250914 (sly)  LAT59 (sly)  LOC101260096 (sly)  LOC101264694 (sly)  LOC103827511 (bra)  LOC103836073 (bra)  LOC103839439 (bra)  LOC103842969 (bra)  LOC103846441 (bra)  LOC103850082 (bra)  LOC103850968 (bra)  LOC103853982 (bra)  LOC103856110 (bra)  LOC103858923 (bra)  LOC103872235 (bra)  LOC107275230 (zma) 
Subcellular
localization
wolf
cyto 2,  mito 2,  cyto_nucl 2,  chlo 1,  plas 1,  nucl 1,  cyto_mito 1,  golg_plas 1  (predict for NP_186776.1)
Subcellular
localization
TargetP
scret 9  (predict for NP_186776.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00040 Pentose and glucuronate interconversions 4
Genes directly connected with AT3G01270 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
19.7 AT3G07820 Pectin lyase-like superfamily protein [detail] 819973
17.4 AT5G39880 transmembrane protein [detail] 833985
17.2 VGD1 Plant invertase/pectin methylesterase inhibitor superfamily [detail] 819318
9.9 BGAL11 beta-galactosidase 11 [detail] 829653
9.5 AT5G50030 Plant invertase/pectin methylesterase inhibitor superfamily protein [detail] 835067
8.4 ACA3 alpha carbonic anhydrase 3 [detail] 830296
5.4 AT1G10770 Plant invertase/pectin methylesterase inhibitor superfamily protein [detail] 837620
Coexpressed
gene list		 [Coexpressed gene list for AT3G01270]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
259269_at
259269_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
259269_at
259269_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
259269_at
259269_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 821142      
Refseq ID (protein) NP_186776.1 


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