| functional annotation |
| Function |
zeta-carotene desaturase |
|
| GO BP |
|
GO:0052889 [list] [network] 9,9'-di-cis-zeta-carotene desaturation to 7,9,7',9'-tetra-cis-lycopene
|
(1 genes)
|
IDA
|
 |
|
GO:1901177 [list] [network] lycopene biosynthetic process
|
(1 genes)
|
IDA
|
|
|
GO:0016120 [list] [network] carotene biosynthetic process
|
(7 genes)
|
IBA
IDA
|
|
|
GO:0016117 [list] [network] carotenoid biosynthetic process
|
(34 genes)
|
IMP
|
|
|
GO:0055114 [list] [network] oxidation-reduction process
|
(1468 genes)
|
IEA
|
|
|
| GO CC |
|
| GO MF |
|
GO:0016719 [list] [network] carotene 7,8-desaturase activity
|
(1 genes)
|
IBA
IDA
|
|
|
GO:0052886 [list] [network] 9,9'-dicis-carotene:quinone oxidoreductase activity
|
(1 genes)
|
IDA
|
|
|
GO:0052887 [list] [network] 7,9,9'-tricis-neurosporene:quinone oxidoreductase activity
|
(1 genes)
|
IEA
|
|
|
GO:0016491 [list] [network] oxidoreductase activity
|
(1435 genes)
|
IBA
|
|
|
| KEGG |
ath00906 [list] [network] Carotenoid biosynthesis (29 genes) |
 |
| Protein |
NP_001319473.1
NP_001319474.1
NP_187138.1
NP_974222.1
|
| BLAST |
NP_001319473.1
NP_001319474.1
NP_187138.1
NP_974222.1
|
| Orthologous |
[Ortholog page]
LOC542604 (zma)
zds (sly)
LOC4342680 (osa)
LOC11415648 (mtr)
LOC100245154 (vvi)
LOC100776502 (gma)
LOC100816122 (gma)
LOC103849152 (bra)
|
Subcellular
localization
wolf |
|
chlo 7,
mito 1,
cyto_mito 1,
plas 1,
extr 1
|
(predict for NP_001319473.1)
|
|
chlo 7,
mito 1,
cyto_mito 1,
plas 1,
extr 1
|
(predict for NP_001319474.1)
|
|
chlo 7,
mito 1,
cyto_mito 1,
plas 1,
extr 1
|
(predict for NP_187138.1)
|
|
chlo 7,
mito 1,
cyto_mito 1,
plas 1,
extr 1
|
(predict for NP_974222.1)
|
|
Subcellular
localization
TargetP |
|
chlo 5
|
(predict for NP_001319473.1)
|
|
chlo 5
|
(predict for NP_001319474.1)
|
|
chlo 5
|
(predict for NP_187138.1)
|
|
chlo 5
|
(predict for NP_974222.1)
|
|
| Gene coexpression |
Network*for
coexpressed
genes |
| KEGG* ID |
Title |
#genes |
Link to the KEGG* map
(Multiple genes) |
| ath00906 |
Carotenoid biosynthesis |
2 |
 |
| ath00500 |
Starch and sucrose metabolism |
2 |
 |
Genes directly connected with ZDS on the network
| coex z* |
Locus |
Function* |
Coexpression
detail |
Entrez Gene ID* |
| 8.8 |
AT3G10970 |
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein |
[detail] |
820268 |
| 8.3 |
VAR1 |
FtsH extracellular protease family |
[detail] |
834232 |
| 7.6 |
PGM2 |
Phosphoglucomutase/phosphomannomutase family protein |
[detail] |
843410 |
| 7.0 |
ACDO1 |
Protein kinase superfamily protein |
[detail] |
829266 |
| 6.9 |
DXR |
1-deoxy-D-xylulose 5-phosphate reductoisomerase |
[detail] |
836400 |
| 6.7 |
CLPB3 |
casein lytic proteinase B3 |
[detail] |
831398 |
| 6.5 |
CIPK26 |
Ca2+regulated serine-threonine protein kinase family protein |
[detail] |
832246 |
| 6.5 |
AT5G57960 |
GTP-binding protein, HflX |
[detail] |
835907 |
| 6.2 |
AT1G63770 |
Peptidase M1 family protein |
[detail] |
842681 |
| 5.7 |
HMA1 |
heavy metal atpase 1 |
[detail] |
829881 |
| 5.0 |
PPOX |
pyridoxin (pyrodoxamine) 5'-phosphate oxidase |
[detail] |
835061 |
| 4.7 |
BETA-OHASE 1 |
beta-hydroxylase 1 |
[detail] |
828675 |
|
Coexpressed
gene list |
[Coexpressed gene list for ZDS]
|
| Gene expression |
| All samples |
[Expression pattern for all samples]
|
AtGenExpress*
(Development) |
259092_at
X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.
|
AtGenExpress*
(Stress) |
259092_at
X axis is samples (pdf file), and Y axis is log2-expression.
|
AtGenExpress*
(Hormone) |
259092_at
X axis is samples (xls file), and Y axis is log-expression.
|
AT3G04870 Gene
