| functional annotation |
| Function |
Integral membrane Yip1 family protein |
|
| GO BP |
|
GO:0042886 [list] [network] amide transport
|
(29 genes)
|
IEA
|
 |
|
GO:0045489 [list] [network] pectin biosynthetic process
|
(63 genes)
|
IEA
|
|
|
GO:0070592 [list] [network] cell wall polysaccharide biosynthetic process
|
(72 genes)
|
IEA
|
|
|
GO:0009664 [list] [network] plant-type cell wall organization
|
(180 genes)
|
IEA
|
|
|
GO:0009832 [list] [network] plant-type cell wall biogenesis
|
(239 genes)
|
IEA
|
|
|
GO:0016192 [list] [network] vesicle-mediated transport
|
(261 genes)
|
IEA
|
|
|
GO:0009826 [list] [network] unidimensional cell growth
|
(356 genes)
|
IEA
|
|
|
GO:0008104 [list] [network] protein localization
|
(419 genes)
|
IEA
|
|
|
GO:0071702 [list] [network] organic substance transport
|
(624 genes)
|
IEA
|
|
|
GO:0051641 [list] [network] cellular localization
|
(648 genes)
|
IEA
|
|
|
GO:0048589 [list] [network] developmental growth
|
(1060 genes)
|
IEA
|
|
|
GO:0044281 [list] [network] small molecule metabolic process
|
(2411 genes)
|
IEA
|
|
|
| GO CC |
|
| GO MF |
|
| KEGG |
|
|
| Protein |
NP_187179.2
|
| BLAST |
NP_187179.2
|
| Orthologous |
[Ortholog page]
AT5G27490 (ath)
LOC4327734 (osa)
LOC7473296 (ppo)
LOC11434181 (mtr)
LOC18098793 (ppo)
LOC100780622 (gma)
LOC100787415 (gma)
LOC100818738 (gma)
LOC100818884 (gma)
LOC101263468 (sly)
LOC103848998 (bra)
LOC103859087 (bra)
LOC103870835 (bra)
LOC123061451 (tae)
LOC123070095 (tae)
LOC123078543 (tae)
LOC123443858 (hvu)
|
Subcellular
localization
wolf |
|
cyto 3,
plas 3,
cyto_plas 3,
mito 1,
pero 1,
golg_plas 1,
cysk_plas 1,
E.R._plas 1,
cyto_E.R. 1
|
(predict for NP_187179.2)
|
|
Subcellular
localization
TargetP |
|
other 7,
chlo 3
|
(predict for NP_187179.2)
|
|
| Gene coexpression |
Network*for
coexpressed
genes |
| KEGG* ID |
Title |
#genes |
Link to the KEGG* map
(Multiple genes) |
| ath04144 |
Endocytosis |
2 |
 |
Genes directly connected with AT3G05280 on the network
| coex z* |
Locus |
Function* |
CoexViewer |
Entrez Gene ID* |
| 11.3 |
ATRER1A |
Rer1 family protein |
[detail] |
830077 |
| 9.4 |
AT1G09330 |
golgi apparatus membrane protein-like protein ECHIDNA protein |
[detail] |
837454 |
| 8.9 |
AT1G30890 |
Integral membrane HRF1 family protein |
[detail] |
839973 |
| 8.9 |
AT5G35730 |
EXS (ERD1/XPR1/SYG1) family protein |
[detail] |
833549 |
| 8.2 |
AT2G36300 |
Integral membrane Yip1 family protein |
[detail] |
818202 |
| 7.8 |
AT1G57620 |
emp24/gp25L/p24 family/GOLD family protein |
[detail] |
842138 |
| 7.3 |
RER1B |
endoplasmatic reticulum retrieval protein 1B |
[detail] |
816698 |
| 7.0 |
AT1G71940 |
SNARE associated Golgi protein family |
[detail] |
843525 |
| 6.7 |
AT3G60800 |
DHHC-type zinc finger family protein |
[detail] |
825251 |
| 6.7 |
LIP1 |
Ras-related small GTP-binding family protein |
[detail] |
836603 |
| 6.6 |
AT1G30300 |
Metallo-hydrolase/oxidoreductase superfamily protein |
[detail] |
839910 |
| 6.5 |
NST-K1 |
nucleotide sugar transporter-KT 1 |
[detail] |
830094 |
| 6.3 |
AT5G04270 |
DHHC-type zinc finger family protein |
[detail] |
830306 |
| 6.3 |
AT5G21070 |
Fe(3+) dicitrate transport system permease |
[detail] |
832231 |
|
Coexpressed
gene list |
[Coexpressed gene list for AT3G05280]
|
| Gene expression |
| All samples |
[Expression pattern for all samples]
|
AtGenExpress*
(Development) |
259323_at
X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.
|
AtGenExpress*
(Stress) |
259323_at
X axis is samples (pdf file), and Y axis is log2-expression.
|
AtGenExpress*
(Hormone) |
259323_at
X axis is samples (xls file), and Y axis is log-expression.
|
At3g05280 Gene
