ATTED-II : GeneID search result

[←][→] ath AT3G08660 Gene

functional annotation

Function

Phototropic-responsive NPH3 family protein

GO BP

GO:0016567 [list] [network] protein ubiquitination

(624 genes)

IEA

GO CC

GO:0009507 [list] [network] chloroplast	(5095 genes)	ISM
GO:0005634 [list] [network] nucleus	(10793 genes)	ISM

GO MF

KEGG

Protein

NP_001327872.1 NP_001327873.1 NP_187478.1

BLAST

NP_001327872.1 NP_001327873.1 NP_187478.1

Orthologous

[Ortholog page] AT3G08570 (ath) LOC4349618 (osa) LOC4351335 (osa) LOC7482610 (ppo) LOC11433631 (mtr) LOC100253624 (vvi) LOC100273151 (zma) LOC100801644 (gma) LOC100813938 (gma) LOC101267344 (sly) LOC103840379 (bra) LOC103859334 (bra)

Subcellular
localization
wolf

chlo 5, chlo_mito 3, plas 1, nucl 1, cyto 1, extr 1, vacu 1, cyto_nucl 1, golg_plas 1, cysk_plas 1, E.R._plas 1	(predict for NP_001327872.1)
cyto 3, nucl 2, cyto_plas 2, plas 1, golg 1, golg_plas 1, cyto_pero 1, cyto_E.R. 1	(predict for NP_001327873.1)
chlo 6, chlo_mito 4, nucl 1, cyto 1, cyto_nucl 1	(predict for NP_187478.1)

Subcellular
localization
TargetP

chlo 7, other 3	(predict for NP_001327872.1)
other 9	(predict for NP_001327873.1)
chlo 7, other 3	(predict for NP_187478.1)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

Genes directly connected with AT3G08660 on the network
coex z^*	Locus	Function^*	Coexpression detail	Entrez Gene ID^*
4.7	PRA1.F1	prenylated RAB acceptor 1.F1	[detail]	838346
4.2	LSH10	LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640)	[detail]	818861
4.2	AT3G08670	serine/arginine repetitive matrix-like protein	[detail]	820014

Coexpressed
gene list

[Coexpressed gene list for AT3G08660]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

258694_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

258694_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

258694_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	820013
Refseq ID (protein)	NP_001327872.1
	NP_001327873.1
	NP_187478.1

The preparation time of this page was 0.2 [sec].