ATTED-II : GeneID search result

[←][→] ath AT3G08820 Gene

functional annotation

Function

Pentatricopeptide repeat (PPR) superfamily protein

GO BP

GO:0009451 [list] [network] RNA modification

(403 genes)

IBA

GO CC

GO:0009507 [list] [network] chloroplast

(5095 genes)

ISM

GO MF

GO:0008270 [list] [network] zinc ion binding

(554 genes)

IEA

KEGG

Protein

NP_187494.1

BLAST

NP_187494.1

Orthologous

[Ortholog page] LOC4351284 (osa) LOC7468074 (ppo) LOC7488758 (ppo) LOC11422149 (mtr) LOC100256789 (vvi) LOC100799205 (gma) LOC101258691 (sly) LOC103629748 (zma) LOC103870586 (bra) LOC107277707 (osa)

Subcellular
localization
wolf

chlo 9

(predict for NP_187494.1)

Subcellular
localization
TargetP

other 7

(predict for NP_187494.1)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

Genes directly connected with AT3G08820 on the network
coex z^*	Locus	Function^*	Coexpression detail	Entrez Gene ID^*
11.8	AT4G02750	Tetratricopeptide repeat (TPR)-like superfamily protein	[detail]	828187
10.9	AT1G09190	Tetratricopeptide repeat (TPR)-like superfamily protein	[detail]	837439
10.1	AT2G33680	Tetratricopeptide repeat (TPR)-like superfamily protein	[detail]	817933
9.9	AT5G56310	Pentatricopeptide repeat (PPR) superfamily protein	[detail]	835730
9.7	AT3G62890	Pentatricopeptide repeat (PPR) superfamily protein	[detail]	825464
9.1	CPSF73-II	cleavage and polyadenylation specificity factor 73 kDa subunit-II	[detail]	814702
7.2	AT5G16860	Tetratricopeptide repeat (TPR)-like superfamily protein	[detail]	831549

Coexpressed
gene list

[Coexpressed gene list for AT3G08820]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

258991_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

258991_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

258991_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	820029
Refseq ID (protein)	NP_187494.1

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