ATTED-II : GeneID search result

[←][→] ath AT3G09060 Gene

functional annotation

Function

Pentatricopeptide repeat (PPR) superfamily protein

GO BP

GO CC

GO:0009507 [list] [network] chloroplast

(5095 genes)

ISM

GO MF

KEGG

Protein

NP_001319507.1 NP_187518.1

BLAST

NP_001319507.1 NP_187518.1

Orthologous

[Ortholog page] LOC4324816 (osa) LOC7487453 (ppo) LOC25498726 (mtr) LOC100263920 (vvi) LOC100819721 (gma) LOC101243633 (sly) LOC103637517 (zma) LOC103859312 (bra)

Subcellular
localization
wolf

cyto 6, nucl 1, mito 1	(predict for NP_001319507.1)
cyto 6, nucl 1, mito 1	(predict for NP_187518.1)

Subcellular
localization
TargetP

other 2	(predict for NP_001319507.1)
other 2	(predict for NP_187518.1)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

Genes directly connected with AT3G09060 on the network
coex z^*	Locus	Function^*	Coexpression detail	Entrez Gene ID^*
10.9	AT3G53360	Tetratricopeptide repeat (TPR)-like superfamily protein	[detail]	824504
9.3	AT3G49142	Tetratricopeptide repeat (TPR)-like superfamily protein	[detail]	10723034
9.2	MEF9	mitochondrial editing factor 9	[detail]	842523
8.8	AT1G13040	Pentatricopeptide repeat (PPR-like) superfamily protein	[detail]	837861
8.7	AT1G07740	Tetratricopeptide repeat (TPR)-like superfamily protein	[detail]	837288
7.0	AT1G03540	Pentatricopeptide repeat (PPR-like) superfamily protein	[detail]	839466
6.1	AT1G71490	Tetratricopeptide repeat (TPR)-like superfamily protein	[detail]	843490

Coexpressed
gene list

[Coexpressed gene list for AT3G09060]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

259208_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

259208_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

259208_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	820059
Refseq ID (protein)	NP_001319507.1
Refseq ID (protein)	NP_187518.1

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