[←][→] ath   AT3G09540 Gene
functional annotation
Function   Pectin lyase-like superfamily protein  
GO BP
GO:0045490 [list] [network] pectin catabolic process  (96 genes)  IEA  
GO CC
GO:0005576 [list] [network] extracellular region  (3363 genes)  ISM  
GO MF
GO:0030570 [list] [network] pectate lyase activity  (24 genes)  IEA  
GO:0016829 [list] [network] lyase activity  (412 genes)  ISS  
GO:0046872 [list] [network] metal ion binding  (3180 genes)  IEA  
KEGG ath00040 [list] [network] Pentose and glucuronate interconversions (96 genes)
Protein NP_001326949.1  NP_001326950.1  NP_187565.1 
BLAST NP_001326949.1  NP_001326950.1  NP_187565.1 
Orthologous [Ortholog page] LOC103870538 (bra) 
Subcellular
localization
wolf
cyto 5,  nucl 2,  chlo 1,  extr 1,  pero 1,  cysk 1  (predict for NP_001326949.1)
pero 4,  cyto 2,  mito 1,  cyto_nucl 1,  chlo 1,  nucl 1,  extr 1,  cysk 1,  cyto_mito 1,  cysk_nucl 1,  mito_plas 1  (predict for NP_001326950.1)
pero 4,  mito 2,  cyto 1,  chlo_mito 1,  chlo 1,  nucl 1,  extr 1,  cysk 1,  cysk_nucl 1,  cyto_E.R. 1,  cyto_plas 1  (predict for NP_187565.1)
Subcellular
localization
TargetP
chlo 4,  other 4  (predict for NP_001326949.1)
chlo 4,  other 4  (predict for NP_001326950.1)
chlo 4,  other 4  (predict for NP_187565.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
Genes directly connected with AT3G09540 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
7.8 NDL2 N-MYC downregulated-like 2 [detail] 831051
6.7 AT3G09550 Ankyrin repeat family protein [detail] 820112
5.6 GAE6 UDP-D-glucuronate 4-epimerase 6 [detail] 821965
Coexpressed
gene list		 [Coexpressed gene list for AT3G09540]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
258719_at
258719_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
258719_at
258719_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
258719_at
258719_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 820111      
Refseq ID (protein) NP_001326949.1 
NP_001326950.1 
NP_187565.1 


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