[←][→] ath   AT3G09840 Gene
functional annotation
Function   cell division cycle 48  
GO BP
GO:0051228 [list] [network] mitotic spindle disassembly  (3 genes)  IBA  
GO:0097352 [list] [network] autophagosome maturation  (3 genes)  IBA  
GO:0031648 [list] [network] protein destabilization  (4 genes)  IMP  
GO:0030970 [list] [network] retrograde protein transport, ER to cytosol  (12 genes)  IBA  
GO:0071712 [list] [network] ER-associated misfolded protein catabolic process  (13 genes)  IBA  
GO:0016236 [list] [network] macroautophagy  (25 genes)  IBA  
GO:0030433 [list] [network] ubiquitin-dependent ERAD pathway  (36 genes)  IBA  
GO:0031348 [list] [network] negative regulation of defense response  (63 genes)  IMP  
GO:0009846 [list] [network] pollen germination  (67 genes)  IMP  
GO:0009860 [list] [network] pollen tube growth  (129 genes)  IMP  
GO:0046686 [list] [network] response to cadmium ion  (346 genes)  IEP  
GO:0051301 [list] [network] cell division  (352 genes)  IMP  
GO CC
GO:0034098 [list] [network] VCP-NPL4-UFD1 AAA ATPase complex  (3 genes)  IBA  
GO:0005811 [list] [network] lipid droplet  (46 genes)  IDA  
GO:0005819 [list] [network] spindle  (82 genes)  IDA  
GO:0009524 [list] [network] phragmoplast  (89 genes)  IDA  
GO:0005635 [list] [network] nuclear envelope  (121 genes)  IDA  
GO:0022626 [list] [network] cytosolic ribosome  (317 genes)  IDA  
GO:0005730 [list] [network] nucleolus  (477 genes)  IDA  
GO:0005618 [list] [network] cell wall  (685 genes)  IDA  
GO:0009506 [list] [network] plasmodesma  (962 genes)  IDA  
GO:0005794 [list] [network] Golgi apparatus  (1430 genes)  IDA  
GO:0005829 [list] [network] cytosol  (3506 genes)  HDA IBA IDA  
GO:0005886 [list] [network] plasma membrane  (3771 genes)  IDA ISM  
GO:0005634 [list] [network] nucleus  (10793 genes)  IBA IDA  
GO:0005737 [list] [network] cytoplasm  (14855 genes)  IBA IDA  
GO MF
GO:0031593 [list] [network] polyubiquitin modification-dependent protein binding  (23 genes)  IBA  
GO:0042802 [list] [network] identical protein binding  (288 genes)  IPI  
GO:0016887 [list] [network] ATPase activity  (507 genes)  IBA  
GO:0005524 [list] [network] ATP binding  (2003 genes)  IEA  
GO:0005515 [list] [network] protein binding  (4605 genes)  IPI  
KEGG ath04141 [list] [network] Protein processing in endoplasmic reticulum (211 genes)
Protein NP_187595.1 
BLAST NP_187595.1 
Orthologous [Ortholog page] CDC48 (gma)  AtCDC48B (ath)  AtCDC48C (ath)  LOC4331645 (osa)  LOC4348731 (osa)  LOC7467628 (ppo)  LOC7484424 (ppo)  LOC11432951 (mtr)  LOC25483983 (mtr)  LOC100246467 (vvi)  LOC100258668 (vvi)  LOC100265402 (vvi)  pco097024a (zma)  LOC100278319 (zma)  LOC100382880 (zma)  LOC100776762 (gma)  LOC100783508 (gma)  LOC100791603 (gma)  LOC100798680 (gma)  LOC100799580 (gma)  LOC100805946 (gma)  LOC100806067 (gma)  LOC100814141 (gma)  LOC101246391 (sly)  LOC101259229 (sly)  LOC101265798 (sly)  LOC101266129 (sly)  LOC101266255 (sly)  LOC103639569 (zma)  LOC103829916 (bra)  LOC103841245 (bra)  LOC103847873 (bra)  LOC103855479 (bra)  LOC103859279 (bra)  LOC103870514 (bra) 
Subcellular
localization
wolf
cyto 5,  cysk_nucl 2,  nucl 1,  cysk 1,  chlo 1  (predict for NP_187595.1)
Subcellular
localization
TargetP
other 6,  chlo 5  (predict for NP_187595.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03050 Proteasome 13
ath04141 Protein processing in endoplasmic reticulum 3
Genes directly connected with CDC48 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
10.5 RPN1A 26S proteasome regulatory subunit S2 1A [detail] 816580
9.4 AT5G23540 Mov34/MPN/PAD-1 family protein [detail] 832420
9.2 RPT1A regulatory particle triple-A 1A [detail] 841812
9.2 AT1G04810 26S proteasome regulatory complex, non-ATPase subcomplex, Rpn2/Psmd1 subunit [detail] 839409
8.1 AtCDC48C ATPase, AAA-type, CDC48 protein [detail] 831870
8.0 DSK2 ubiquitin family protein [detail] 816225
7.8 PLDALPHA1 phospholipase D alpha 1 [detail] 820816
7.7 ECA1 ER-type Ca2+-ATPase 1 [detail] 837296
7.7 SAY1 Ubiquitin-like superfamily protein [detail] 826779
6.9 AT5G42220 Ubiquitin-like superfamily protein [detail] 834227
6.6 NBR1 ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein [detail] 828571
Coexpressed
gene list		 [Coexpressed gene list for CDC48]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
258649_at
258649_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
258649_at
258649_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
258649_at
258649_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 820142      
Refseq ID (protein) NP_187595.1 


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