[←][→] ath   At3g11960 Gene
functional annotation
Function   Cleavage and polyadenylation specificity factor (CPSF) A subunit protein    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO CC
GO:0005634 [list] [network] nucleus  (10305 genes)  ISM  
GO MF
GO:0003676 [list] [network] nucleic acid binding  (3100 genes)  IEA  
KEGG ath03040 [list] [network] Spliceosome (203 genes)
Protein NP_001327782.1  NP_001327783.1  NP_187802.2  NP_850565.1 
BLAST NP_001327782.1  NP_001327783.1  NP_187802.2  NP_850565.1 
Orthologous [Ortholog page] LOC4342674 (osa)  LOC7455620 (ppo)  LOC25499564 (mtr)  LOC100799711 (gma)  LOC100806799 (gma)  LOC101261183 (sly)  LOC103859423 (bra)  LOC103870295 (bra)  LOC112419329 (mtr)  LOC123044856 (tae)  LOC123052774 (tae)  LOC123188638 (tae)  LOC123426147 (hvu) 
Subcellular
localization
wolf
nucl 8,  E.R. 1  (predict for NP_001327782.1)
nucl 8,  E.R. 1  (predict for NP_001327783.1)
nucl 8,  E.R. 1  (predict for NP_187802.2)
nucl 6,  E.R. 2,  chlo 1,  cyto 1  (predict for NP_850565.1)
Subcellular
localization
TargetP
chlo 9,  other 3  (predict for NP_001327782.1)
chlo 9,  other 3  (predict for NP_001327783.1)
chlo 9,  other 3  (predict for NP_187802.2)
chlo 9,  other 3  (predict for NP_850565.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03015 mRNA surveillance pathway 2
Genes directly connected with AT3G11960 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
10.8 KAK HECT ubiquitin protein ligase family protein KAK [detail] 830017
10.0 CCT RNA polymerase II transcription mediator [detail] 827954
9.7 HUA2 Tudor/PWWP/MBT domain-containing protein [detail] 832379
8.4 AT1G27750 nucleic acid binding protein [detail] 839668
8.0 AT1G27595 symplekin [detail] 839651
7.7 AT3G51620 PAP/OAS1 substrate-binding domain superfamily [detail] 824325
Coexpressed
gene list		 [Coexpressed gene list for AT3G11960]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
258756_at
258756_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
258756_at
258756_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
258756_at
258756_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 820369      
Refseq ID (protein) NP_001327782.1 
NP_001327783.1 
NP_187802.2 
NP_850565.1 


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