[←][→] ath   At3g12130 Gene
functional annotation
Function   KH domain-containing protein / zinc finger (CCCH type) family protein    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:1900057 [list] [network] positive regulation of leaf senescence  (20 genes)  IMP  
GO:2000028 [list] [network] regulation of photoperiodism, flowering  (94 genes)  IGI  
GO:0006355 [list] [network] regulation of DNA-templated transcription  (1656 genes)  TAS  
GO CC
GO:0005634 [list] [network] nucleus  (10305 genes)  IDA ISM  
GO MF
GO:0003700 [list] [network] DNA-binding transcription factor activity  (1576 genes)  ISS  
GO:0003723 [list] [network] RNA binding  (1729 genes)  IDA IEA  
KEGG
Protein NP_001327732.1  NP_566412.1 
BLAST NP_001327732.1  NP_566412.1 
Orthologous [Ortholog page] AT5G06770 (ath)  LOC4328599 (osa)  LOC4337319 (osa)  LOC4341537 (osa)  LOC7455767 (ppo)  LOC7461390 (ppo)  LOC7468933 (ppo)  LOC7479532 (ppo)  LOC11430803 (mtr)  LOC11446765 (mtr)  LOC18106133 (ppo)  LOC25483515 (mtr)  LOC100777939 (gma)  LOC100778470 (gma)  LOC100792652 (gma)  LOC100803981 (gma)  LOC100817463 (gma)  LOC100818781 (gma)  LOC101251616 (sly)  LOC101252539 (sly)  LOC101262368 (sly)  LOC101262841 (sly)  LOC101267206 (sly)  LOC103845792 (bra)  LOC103859428 (bra)  LOC103870275 (bra)  LOC123046933 (tae)  LOC123054763 (tae)  LOC123132658 (tae)  LOC123136748 (tae)  LOC123136750 (tae)  LOC123144234 (tae)  LOC123148458 (tae)  LOC123156377 (tae)  LOC123165017 (tae)  LOC123190606 (tae)  LOC123402389 (hvu)  LOC123405784 (hvu)  LOC123412773 (hvu)  LOC123427992 (hvu) 
Subcellular
localization
wolf
nucl 8,  cyto_nucl 5,  cyto 1  (predict for NP_001327732.1)
nucl 9  (predict for NP_566412.1)
Subcellular
localization
TargetP
chlo 6,  other 4  (predict for NP_001327732.1)
other 8  (predict for NP_566412.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 4
ath03015 mRNA surveillance pathway 3
Genes directly connected with AT3G12130 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
7.1 FYPP1 Calcineurin-like metallo-phosphoesterase superfamily protein [detail] 841459
6.6 AT2G32070 Polynucleotidyl transferase, ribonuclease H-like superfamily protein [detail] 817767
6.5 CSP3 cold shock domain protein 3 [detail] 816297
6.5 AT1G80040 ubiquitin system component Cue [detail] 844344
6.3 NF-YB1 nuclear factor Y, subunit B1 [detail] 818472
6.3 AL7 alfin-like 7 [detail] 838013
6.2 FYPP3 flower-specific, phytochrome-associated protein phosphatase 3 [detail] 821536
6.2 CKB1 casein kinase II beta chain 1 [detail] 834754
6.1 SGA2 ASF1 like histone chaperone [detail] 842992
Coexpressed
gene list		 [Coexpressed gene list for AT3G12130]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
256278_at
256278_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
256278_at
256278_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
256278_at
256278_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 820388      
Refseq ID (protein) NP_001327732.1 
NP_566412.1 


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