[←][→] ath   At3g13880 Gene
functional annotation
Function   Tetratricopeptide repeat (TPR)-like superfamily protein    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:1900865 [list] [network] chloroplast RNA modification  (18 genes)  IMP  
GO:1900864 [list] [network] mitochondrial RNA modification  (32 genes)  IMP  
GO CC
GO:0005739 [list] [network] mitochondrion  (4228 genes)  ISM  
GO MF
KEGG
Protein NP_188004.1 
BLAST NP_188004.1 
Orthologous [Ortholog page] LOC9267950 (osa)  LOC25495661 (mtr)  LOC103842513 (bra)  LOC123063509 (tae)  LOC123072614 (tae)  LOC123080802 (tae)  LOC123445572 (hvu) 
Subcellular
localization
wolf
chlo 5,  nucl 4,  cyto 1,  cysk 1  (predict for NP_188004.1)
Subcellular
localization
TargetP
mito 5  (predict for NP_188004.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
Genes directly connected with AT3G13880 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
13.2 AT3G58590 Pentatricopeptide repeat (PPR) superfamily protein [detail] 825028
12.4 AT5G52850 Pentatricopeptide repeat (PPR) superfamily protein [detail] 835362
12.3 AT5G08305 Pentatricopeptide repeat (PPR) superfamily protein [detail] 10723051
11.7 AT3G02330 Pentatricopeptide repeat (PPR) superfamily protein [detail] 821115
10.8 AT5G25500 exosome complex exonuclease [detail] 832625
9.2 AT4G19191 Tetratricopeptide repeat (TPR)-like superfamily protein [detail] 6240220
9.0 EMB2744 Pentatricopeptide repeat (PPR) superfamily protein [detail] 833964
8.8 MEF29 Pentatricopeptide repeat (PPR) superfamily protein [detail] 829193
8.4 AT3G14730 Pentatricopeptide repeat (PPR) superfamily protein [detail] 820701
8.1 AT3G47530 Pentatricopeptide repeat (PPR) superfamily protein [detail] 823907
7.4 AT5G66631 Tetratricopeptide repeat (TPR)-like superfamily protein [detail] 6240924
Coexpressed
gene list		 [Coexpressed gene list for AT3G13880]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
257607_at
257607_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
257607_at
257607_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
257607_at
257607_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 820601      
Refseq ID (protein) NP_188004.1 


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