[←][→] ath   AT3G16260 Gene
functional annotation
Function   tRNAse Z4  
GO BP
GO:0072684 [list] [network] mitochondrial tRNA 3'-trailer cleavage, endonucleolytic  (2 genes)  IBA  
GO:0034414 [list] [network] tRNA 3'-trailer cleavage, endonucleolytic  (4 genes)  IDA  
GO:0042780 [list] [network] tRNA 3'-end processing  (6 genes)  IDA  
GO CC
GO:0005739 [list] [network] mitochondrion  (4405 genes)  IBA  
GO:0005634 [list] [network] nucleus  (10793 genes)  ISM  
GO MF
GO:0042781 [list] [network] 3'-tRNA processing endoribonuclease activity  (4 genes)  IDA  
KEGG ath03013 [list] [network] RNA transport (171 genes)
Protein NP_001327484.1  NP_001327485.1  NP_188247.2 
BLAST NP_001327484.1  NP_001327485.1  NP_188247.2 
Orthologous [Ortholog page] TRZ3 (ath)  LOC4324278 (osa)  LOC7475087 (ppo)  LOC11427220 (mtr)  LOC100254820 (vvi)  LOC100784996 (gma)  LOC100786011 (gma)  LOC101243871 (sly)  LOC101245927 (sly)  LOC101265382 (sly)  LOC103635013 (zma)  LOC103869840 (bra)  LOC103871232 (bra) 
Subcellular
localization
wolf
nucl 4,  cyto 4,  chlo 1,  mito 1,  cysk 1,  chlo_mito 1  (predict for NP_001327484.1)
chlo 4,  mito 3,  nucl 1,  cyto_mito 1,  mito_plas 1  (predict for NP_001327485.1)
chlo 5,  nucl 2,  mito 1,  nucl_plas 1  (predict for NP_188247.2)
Subcellular
localization
TargetP
other 9  (predict for NP_001327484.1)
mito 9  (predict for NP_001327485.1)
chlo 7  (predict for NP_188247.2)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00970 Aminoacyl-tRNA biosynthesis 6
Genes directly connected with TRZ4 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
8.1 EMB2369 tRNA synthetase class I (I, L, M and V) family protein [detail] 825755
7.3 EDD1 glycine-tRNA ligase [detail] 823966
7.1 CFM2 CRM family member 2 [detail] 821288
6.8 AT5G19210 P-loop containing nucleoside triphosphate hydrolases superfamily protein [detail] 832041
6.6 AT5G04710 Zn-dependent exopeptidases superfamily protein [detail] 830349
5.4 RUS2 root UVB sensitive protein (Protein of unknown function, DUF647) [detail] 817675
Coexpressed
gene list		 [Coexpressed gene list for TRZ4]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
258051_at
258051_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
258051_at
258051_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
258051_at
258051_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 820872      
Refseq ID (protein) NP_001327484.1 
NP_001327485.1 
NP_188247.2 


The preparation time of this page was 0.2 [sec].