[][] ath   AT3G16850 Gene
functional annotation
Function   Pectin lyase-like superfamily protein
GO BP
GO:0071555 [list] [network] cell wall organization  (538 genes)  IEA  
GO:0005975 [list] [network] carbohydrate metabolic process  (995 genes)  IEA  
GO CC
GO:0099503 [list] [network] secretory vesicle  (169 genes)  HDA  
GO:0005773 [list] [network] vacuole  (1133 genes)  IDA  
GO:0005576 [list] [network] extracellular region  (3363 genes)  IEA ISM  
GO MF
GO:0004650 [list] [network] polygalacturonase activity  (52 genes)  IEA  
GO:0016829 [list] [network] lyase activity  (412 genes)  IEA  
KEGG
Protein NP_188308.1 
BLAST NP_188308.1 
Orthologous [Ortholog page] AT3G06770 (ath)AT5G49215 (ath)LOC4351055 (osa)LOC4352486 (osa)LOC7477215 (ppo)LOC11420255 (mtr)LOC25488046 (mtr)LOC100191454 (zma)LOC100241496 (vvi)LOC100247060 (vvi)LOC100282607 (zma)LOC100777503 (gma)LOC100787190 (gma)LOC100797678 (gma)LOC100801823 (gma)LOC100802343 (gma)LOC100806574 (gma)LOC100815184 (gma)LOC100818007 (gma)LOC101264974 (sly)LOC101268765 (sly)LOC103854580 (bra)LOC103859180 (bra)LOC103859685 (bra)LOC103869730 (bra)LOC103875025 (bra)
Subcellular
localization
wolf
vacu 3,  chlo 2,  E.R._vacu 2,  E.R. 1,  chlo_mito 1  (predict for NP_188308.1)
Subcellular
localization
TargetP
scret 9  (predict for NP_188308.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
Genes directly connected with AT3G16850 on the network
coex z* Locus Function* Coexpression
detail
Entrez Gene ID*
7.1 AT3G07010 Pectin lyase-like superfamily protein [detail] 819886
6.5 AT4G23820 Pectin lyase-like superfamily protein [detail] 828482
6.5 XTH8 xyloglucan endotransglucosylase/hydrolase 8 [detail] 837698
6.4 PIP1;5 plasma membrane intrinsic protein 1;5 [detail] 828439
5.2 GATL7 galacturonosyltransferase-like 7 [detail] 825440
4.5 AT1G22910 RNA-binding (RRM/RBD/RNP motifs) family protein [detail] 838898
Coexpressed
gene list
[Coexpressed gene list for AT3G16850]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
257651_at
257651_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
257651_at
257651_at.png

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress*
(Hormone)
257651_at
257651_at.png

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID 820938    
Refseq ID (protein) NP_188308.1 


The preparation time of this page was 0.2 [sec].