[←][→] ath   AT3G19440 Gene
functional annotation
Function   Pseudouridine synthase family protein  
GO BP
GO:0001522 [list] [network] pseudouridine synthesis  (21 genes)  IEA  
GO CC
GO:0005739 [list] [network] mitochondrion  (4405 genes)  IDA ISM  
GO:0009507 [list] [network] chloroplast  (5095 genes)  ISM  
GO MF
GO:0009982 [list] [network] pseudouridine synthase activity  (20 genes)  TAS  
GO:0003723 [list] [network] RNA binding  (1790 genes)  IEA  
KEGG
Protein NP_001325528.1  NP_188575.1 
BLAST NP_001325528.1  NP_188575.1 
Orthologous [Ortholog page] LOC4346373 (osa)  LOC7457559 (ppo)  LOC25494475 (mtr)  LOC100253686 (vvi)  LOC100285271 (zma)  LOC100779473 (gma)  LOC101250345 (sly)  LOC103869454 (bra) 
Subcellular
localization
wolf
chlo 4,  mito 3,  nucl 1,  cyto_mito 1  (predict for NP_001325528.1)
mito 4,  chlo 4,  cyto_mito 3,  nucl 1  (predict for NP_188575.1)
Subcellular
localization
TargetP
mito 8,  chlo 3  (predict for NP_001325528.1)
mito 8,  chlo 3  (predict for NP_188575.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 6
Genes directly connected with AT3G19440 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
11.9 AT1G30960 GTP-binding family protein [detail] 839983
10.6 AT4G36580 AAA-type ATPase family protein [detail] 829810
10.3 AT4G04940 transducin family protein / WD-40 repeat family protein [detail] 825833
8.9 AT3G13150 Tetratricopeptide repeat (TPR)-like superfamily protein [detail] 820503
8.8 AT3G18580 Nucleic acid-binding, OB-fold-like protein [detail] 821389
8.4 PSD1 phosphatidylserine decarboxylase 1 [detail] 827373
7.8 AT4G34360 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [detail] 829586
4.5 AT3G62050 Putative endonuclease or glycosyl hydrolase [detail] 825378
Coexpressed
gene list		 [Coexpressed gene list for AT3G19440]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
258009_at
258009_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
258009_at
258009_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
258009_at
258009_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 821478      
Refseq ID (protein) NP_001325528.1 
NP_188575.1 


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