[←][→] ath   At3g19670 Gene
functional annotation
Function   pre-mRNA-processing protein 40B      
GO BP
GO:0045292 [list] [network] mRNA cis splicing, via spliceosome  (22 genes)  IEA  
GO:0008380 [list] [network] RNA splicing  (191 genes)  IDA  
GO CC
GO:0005634 [list] [network] nucleus  (10305 genes)  IDA ISM  
GO MF
GO:0070063 [list] [network] RNA polymerase binding  (7 genes)  IDA  
KEGG ath03040 [list] [network] Spliceosome (203 genes)
Protein NP_001325767.1  NP_001325768.1  NP_001325769.1  NP_188601.4 
BLAST NP_001325767.1  NP_001325768.1  NP_001325769.1  NP_188601.4 
Orthologous [Ortholog page] LOC103869430 (bra) 
Subcellular
localization
wolf
nucl 7,  cyto_nucl 4,  chlo 2  (predict for NP_001325767.1)
nucl 7,  cyto_nucl 4,  chlo 2  (predict for NP_001325768.1)
nucl 7,  cyto_nucl 4,  chlo 2  (predict for NP_001325769.1)
nucl 7,  cyto_nucl 4,  chlo 2  (predict for NP_188601.4)
Subcellular
localization
TargetP
other 5  (predict for NP_001325767.1)
other 6  (predict for NP_001325768.1)
other 5  (predict for NP_001325769.1)
other 5  (predict for NP_188601.4)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 7
ath03013 Nucleocytoplasmic transport 3
ath03450 Non-homologous end-joining 2
Genes directly connected with PRP40B on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
10.5 AT1G10320 Zinc finger C-x8-C-x5-C-x3-H type family protein [detail] 837571
10.3 AT5G09880 Splicing factor, CC1-like protein [detail] 830848
10.0 emb1579 ATP/GTP-binding protein family [detail] 814844
9.6 SUA suppressor of abi3-5 [detail] 824590
8.0 HUB2 histone mono-ubiquitination 2 [detail] 841968
7.1 AT4G34140 D111/G-patch domain-containing protein [detail] 829562
6.4 PRP40C pre-mRNA-processing protein 40C [detail] 821521
6.0 ATLIG4 DNA ligase IV [detail] 835822
4.7 MRE11 DNA repair and meiosis protein (Mre11) [detail] 835514
Coexpressed
gene list		 [Coexpressed gene list for PRP40B]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
257075_at
257075_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
257075_at
257075_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
257075_at
257075_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 821504      
Refseq ID (protein) NP_001325767.1 
NP_001325768.1 
NP_001325769.1 
NP_188601.4 


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