[][] ath   AT3G20440 Gene
functional annotation
Function   Alpha amylase family protein
GO BP
GO:0005978 [list] [network] glycogen biosynthetic process  (10 genes)  IEA  
GO:0019252 [list] [network] starch biosynthetic process  (33 genes)  IEA  
GO:0009793 [list] [network] embryo development ending in seed dormancy  (547 genes)  NAS  
GO:0005975 [list] [network] carbohydrate metabolic process  (995 genes)  IBA IMP  
GO:0009791 [list] [network] post-embryonic development  (1519 genes)  IMP  
GO CC
GO:0009501 [list] [network] amyloplast  (11 genes)  IEA  
GO:0009570 [list] [network] chloroplast stroma  (750 genes)  IEA  
GO:0009507 [list] [network] chloroplast  (5095 genes)  IDA ISM  
GO:0009536 [list] [network] plastid  (5519 genes)  IDA  
GO MF
GO:0003844 [list] [network] 1,4-alpha-glucan branching enzyme activity  (3 genes)  IBA  
GO:0102752 [list] [network] 1,4-alpha-glucan branching enzyme activity (using a glucosylated glycogenin as primer for glycogen synthesis)  (3 genes)  IEA  
GO:0043169 [list] [network] cation binding  (3197 genes)  IEA  
KEGG ath00500 [list] [network] Starch and sucrose metabolism (165 genes)
Protein NP_001154629.1  NP_001189940.1  NP_188679.2 
BLAST NP_001154629.1  NP_001189940.1  NP_188679.2 
Orthologous [Ortholog page] LOC4341008 (osa)LOC7487520 (ppo)LOC25488992 (mtr)LOC100136878 (zma)LOC100260732 (vvi)LOC100780600 (gma)LOC101268012 (sly)LOC103869322 (bra)
Subcellular
localization
wolf
pero 4,  chlo 3,  mito 1,  nucl 1,  cyto 1,  cyto_nucl 1,  cyto_mito 1,  mito_plas 1  (predict for NP_001154629.1)
pero 4,  chlo 3,  mito 1,  nucl 1,  cyto 1,  cyto_nucl 1,  cyto_mito 1,  mito_plas 1  (predict for NP_001189940.1)
pero 4,  chlo 3,  mito 1,  nucl 1,  cyto 1,  cyto_nucl 1,  cyto_mito 1,  mito_plas 1  (predict for NP_188679.2)
Subcellular
localization
TargetP
chlo 6  (predict for NP_001154629.1)
chlo 6  (predict for NP_001189940.1)
chlo 6  (predict for NP_188679.2)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
Genes directly connected with EMB2729 on the network
coex z* Locus Function* Coexpression
detail
Entrez Gene ID*
11.1 Cpn60alpha2 TCP-1/cpn60 chaperonin family protein [detail] 832000
10.9 EMB3108 DEA(D/H)-box RNA helicase family protein [detail] 842293
9.9 AT3G17830 Molecular chaperone Hsp40/DnaJ family protein [detail] 821051
6.4 emb1974 NHL domain-containing protein [detail] 819892
Coexpressed
gene list
[Coexpressed gene list for EMB2729]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
257667_at
257667_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
257667_at
257667_at.png

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress*
(Hormone)
257667_at
257667_at.png

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID 821589    
Refseq ID (protein) NP_001154629.1 
NP_001189940.1 
NP_188679.2 


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