[←][→] ath   At3g20840 Gene
functional annotation
Function   Integrase-type DNA-binding superfamily protein    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:0010449 [list] [network] root meristem growth  (16 genes)  IGI  
GO:0000723 [list] [network] telomere maintenance  (21 genes)  IDA  
GO:0019827 [list] [network] stem cell population maintenance  (95 genes)  IMP  
GO:0007389 [list] [network] pattern specification process  (295 genes)  IMP  
GO:0048364 [list] [network] root development  (1192 genes)  IGI IMP  
GO:0006355 [list] [network] regulation of DNA-templated transcription  (1656 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (10305 genes)  IDA ISM  
GO MF
GO:0000976 [list] [network] transcription cis-regulatory region binding  (708 genes)  IPI  
GO:0003700 [list] [network] DNA-binding transcription factor activity  (1576 genes)  ISS  
GO:0005515 [list] [network] protein binding  (5066 genes)  IPI  
KEGG
Protein NP_188720.2 
BLAST NP_188720.2 
Orthologous [Ortholog page] PLT2 (ath)  LOC7478340 (ppo)  LOC7487036 (ppo)  LOC11414449 (mtr)  LOC11434282 (mtr)  LOC100170752 (gma)  LOC100788471 (gma)  LOC101252050 (sly)  LOC103835650 (bra)  LOC103868583 (bra)  LOC103869225 (bra)  LOC103871295 (bra) 
Subcellular
localization
wolf
nucl 9,  cyto_nucl 5  (predict for NP_188720.2)
Subcellular
localization
TargetP
other 4  (predict for NP_188720.2)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
Genes directly connected with PLT1 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
18.1 PLT2 Integrase-type DNA-binding superfamily protein [detail] 841542
11.6 BBM Integrase-type DNA-binding superfamily protein [detail] 831609
10.2 AT2G12646 PLATZ transcription factor family protein [detail] 3768403
9.6 RGF3 root meristem growth factor [detail] 814929
8.4 RGF4 root meristem growth factor-like protein [detail] 822736
7.9 SMB NAC (No Apical Meristem) domain transcriptional regulator superfamily protein [detail] 844296
7.0 AZG2 Xanthine/uracil permease family protein [detail] 835095
6.0 AT1G48510 Surfeit locus 1 cytochrome c oxidase biogenesis protein [detail] 841272
5.5 AT1G26680 transcriptional factor B3 family protein [detail] 839209
5.1 TT10 Laccase/Diphenol oxidase family protein [detail] 834862
Coexpressed
gene list		 [Coexpressed gene list for PLT1]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
257976_at
257976_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
257976_at
257976_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
257976_at
257976_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 821632      
Refseq ID (protein) NP_188720.2 


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