ATTED-II : GeneID search result

[←][→] ath AT3G26540 Gene

functional annotation

Function

Tetratricopeptide repeat (TPR)-like superfamily protein

GO BP

GO:0010449 [list] [network] root meristem growth	(14 genes)	IGI
GO:0009451 [list] [network] RNA modification	(403 genes)	IBA

GO CC

GO:0005739 [list] [network] mitochondrion

(4405 genes)

ISM

GO MF

GO:0005515 [list] [network] protein binding

(4605 genes)

IPI

KEGG

Protein

NP_189286.1

BLAST

NP_189286.1

Orthologous

[Ortholog page] LOC4335909 (osa) LOC7467846 (ppo) LOC25489737 (mtr) LOC100253985 (vvi) LOC100775626 (gma) LOC101266932 (sly) LOC103641670 (zma) LOC103846352 (bra)

Subcellular
localization
wolf

chlo 5, nucl 1, plas 1, vacu 1, nucl_plas 1

(predict for NP_189286.1)

Subcellular
localization
TargetP

other 6

(predict for NP_189286.1)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

Genes directly connected with AT3G26540 on the network
coex z^*	Locus	Function^*	Coexpression detail	Entrez Gene ID^*
9.2	AT5G46100	Pentatricopeptide repeat (PPR) superfamily protein	[detail]	834651
9.1	PGN	Tetratricopeptide repeat (TPR)-like superfamily protein	[detail]	842111
9.0	EMB1025	Pentatricopeptide repeat (PPR) superfamily protein	[detail]	827754
8.3	AT1G80880	Tetratricopeptide repeat (TPR)-like superfamily protein	[detail]	844428
8.2	nMAT1	Intron maturase, type II family protein	[detail]	839880
8.2	PDE247	Tetratricopeptide repeat (TPR)-like superfamily protein	[detail]	837083

Coexpressed
gene list

[Coexpressed gene list for AT3G26540]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

257616_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

257616_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

257616_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	822262
Refseq ID (protein)	NP_189286.1

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