ATTED-II : GeneID search result

[←][→] ath AT3G26744 Gene

functional annotation

Function

basic helix-loop-helix (bHLH) DNA-binding superfamily protein

GO BP

GO:0048317 [list] [network] seed morphogenesis	(10 genes)	IGI IMP
GO:0010115 [list] [network] regulation of abscisic acid biosynthetic process	(14 genes)	IMP
GO:0010440 [list] [network] stomatal lineage progression	(19 genes)	IMP
GO:0050826 [list] [network] response to freezing	(28 genes)	IMP
GO:0010162 [list] [network] seed dormancy process	(32 genes)	IGI IMP
GO:0009960 [list] [network] endosperm development	(34 genes)	IGI
GO:0009738 [list] [network] abscisic acid-activated signaling pathway	(194 genes)	IMP
GO:0045892 [list] [network] negative regulation of transcription, DNA-templated	(253 genes)	IMP
GO:0009409 [list] [network] response to cold	(411 genes)	IEP
GO:0045893 [list] [network] positive regulation of transcription, DNA-templated	(495 genes)	IDA

GO CC

GO:0005634 [list] [network] nucleus

(10793 genes)

IDA ISM

GO MF

GO:0001046 [list] [network] core promoter sequence-specific DNA binding	(7 genes)	IPI
GO:0000987 [list] [network] proximal promoter sequence-specific DNA binding	(87 genes)	IDA
GO:0046983 [list] [network] protein dimerization activity	(570 genes)	IEA
GO:0044212 [list] [network] transcription regulatory region DNA binding	(871 genes)	IPI
GO:0003700 [list] [network] DNA-binding transcription factor activity	(1599 genes)	ISS
GO:0003677 [list] [network] DNA binding	(2280 genes)	IDA TAS
GO:0005515 [list] [network] protein binding	(4605 genes)	IPI

KEGG

Protein

NP_001030774.1 NP_001030776.2 NP_001327170.1 NP_001327171.1 NP_189309.2

BLAST

NP_001030774.1 NP_001030776.2 NP_001327170.1 NP_001327171.1 NP_189309.2

Orthologous

[Ortholog page] SCRM2 (ath) LOC4326959 (osa) LOC4350609 (osa) LOC7454596 (ppo) LOC11407805 (mtr) LOC11429864 (mtr) LOC11446792 (mtr) LOC25491140 (mtr) LOC100193144 (zma) ICE1 (gma) ICE2 (gma) ICE3 (gma) ICE4 (gma) LOC100245461 (vvi) LOC100245749 (vvi) LOC100265294 (vvi) LOC100804797 (gma) ICEE (gma) ICE1a (sly) LOC101266110 (sly) LOC103652960 (zma) LOC103836134 (bra) LOC103846282 (bra) LOC103854299 (bra) LOC103871973 (bra) LOC103875273 (bra)

Subcellular
localization
wolf

nucl 9	(predict for NP_001030774.1)
nucl 9	(predict for NP_001030776.2)
nucl 7, cyto_nucl 4, golg 1	(predict for NP_001327170.1)
nucl 9, cyto 1	(predict for NP_001327171.1)
nucl 9	(predict for NP_189309.2)

Subcellular
localization
TargetP

other 9	(predict for NP_001030774.1)
other 9	(predict for NP_001030776.2)
other 9	(predict for NP_001327170.1)
other 9	(predict for NP_001327171.1)
other 9	(predict for NP_189309.2)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04016	MAPK signaling pathway - plant	3

Genes directly connected with ICE1 on the network
coex z^*	Locus	Function^*	Coexpression detail	Entrez Gene ID^*
6.5	SCRM2	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[detail]	837843
5.5	TMM	Leucine-rich repeat (LRR) family protein	[detail]	844348
5.5	EMS1	Leucine-rich repeat transmembrane protein kinase	[detail]	830619

Coexpressed
gene list

[Coexpressed gene list for ICE1]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

258310_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

258310_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

258310_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	822287
Refseq ID (protein)	NP_001030774.1
	NP_001030776.2
	NP_001327170.1
	NP_001327171.1
	NP_189309.2

The preparation time of this page was 0.2 [sec].