ATTED-II : GeneID search result

[←][→] ath AT3G46210 Gene

functional annotation

Function

Ribosomal protein S5 domain 2-like superfamily protein

GO BP

GO:0071051 [list] [network] polyadenylation-dependent snoRNA 3'-end processing	(7 genes)	IBA
GO:0034475 [list] [network] U4 snRNA 3'-end processing	(10 genes)	IBA
GO:0034427 [list] [network] nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'	(12 genes)	IBA
GO:0071028 [list] [network] nuclear mRNA surveillance	(14 genes)	IBA
GO:0016075 [list] [network] rRNA catabolic process	(17 genes)	IBA
GO:0006364 [list] [network] rRNA processing	(276 genes)	IEA

GO CC

GO:0000177 [list] [network] cytoplasmic exosome (RNase complex)	(12 genes)	IBA
GO:0000176 [list] [network] nuclear exosome (RNase complex)	(13 genes)	IBA
GO:0005840 [list] [network] ribosome	(463 genes)	IEA
GO:0005730 [list] [network] nucleolus	(477 genes)	IBA
GO:0005737 [list] [network] cytoplasm	(14855 genes)	ISM

GO MF

GO:0004527 [list] [network] exonuclease activity

(97 genes)

IEA

KEGG

ath03018 [list] [network] RNA degradation (113 genes)

Protein

NP_001030817.1 NP_001030818.1 NP_001030819.1 NP_001078250.1 NP_001190019.1 NP_001325681.1 NP_190207.1

BLAST

NP_001030817.1 NP_001030818.1 NP_001030819.1 NP_001078250.1 NP_001190019.1 NP_001325681.1 NP_190207.1

Orthologous

[Ortholog page] LOC4334824 (osa) LOC11436468 (mtr) LOC100262803 (vvi) LOC100280057 (zma) LOC100790116 (gma) LOC100801484 (gma) LOC100815140 (gma) LOC101256312 (sly) LOC103873315 (bra)

Subcellular
localization
wolf

cyto 5, chlo 1, E.R. 1, mito 1, extr 1, pero 1, E.R._vacu 1, E.R._plas 1	(predict for NP_001030817.1)
cyto 5, chlo 1, E.R. 1, mito 1, extr 1, pero 1, E.R._vacu 1, E.R._plas 1	(predict for NP_001030818.1)
cyto 5, chlo 1, E.R. 1, mito 1, extr 1, pero 1, E.R._vacu 1, E.R._plas 1	(predict for NP_001030819.1)
cyto 5, chlo 1, E.R. 1, mito 1, extr 1, pero 1, E.R._vacu 1, E.R._plas 1	(predict for NP_001078250.1)
cyto 5, chlo 1, E.R. 1, mito 1, extr 1, pero 1, E.R._vacu 1, E.R._plas 1	(predict for NP_001190019.1)
cyto 5, chlo 1, E.R. 1, mito 1, extr 1, pero 1, E.R._vacu 1, E.R._plas 1	(predict for NP_001325681.1)
cyto 5, chlo 1, E.R. 1, mito 1, extr 1, pero 1, E.R._vacu 1, E.R._plas 1	(predict for NP_190207.1)

Subcellular
localization
TargetP

other 7	(predict for NP_001030817.1)
other 7	(predict for NP_001030818.1)
other 7	(predict for NP_001030819.1)
other 7	(predict for NP_001078250.1)
other 7	(predict for NP_001190019.1)
other 7	(predict for NP_001325681.1)
other 7	(predict for NP_190207.1)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03008	Ribosome biogenesis in eukaryotes	5
ath03018	RNA degradation	4
ath03040	Spliceosome	2

Genes directly connected with AT3G46210 on the network
coex z^*	Locus	Function^*	Coexpression detail	Entrez Gene ID^*
9.9	AT3G07750	3'-5'-exoribonuclease family protein	[detail]	819966
9.8	WDR55	transducin family protein / WD-40 repeat family protein	[detail]	817987
9.8	AT5G64680	mediator-associated protein	[detail]	836589
9.1	FIB1	fibrillarin 1	[detail]	835323
8.7	AT3G07860	Ubiquitin-like superfamily protein	[detail]	819977
6.6	ELP6	elongator protein 6	[detail]	826600

Coexpressed
gene list

[Coexpressed gene list for AT3G46210]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

252508_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

252508_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

252508_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	823766
Refseq ID (protein)	NP_001030817.1
	NP_001030818.1
	NP_001030819.1
	NP_001078250.1
	NP_001190019.1
	NP_001325681.1
	NP_190207.1

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