[←][→] ath   At3g46960 Gene
functional annotation
Function   RNA helicase, ATP-dependent, SK12/DOB1 protein      
GO BP
GO:0000292 [list] [network] RNA fragment catabolic process  (1 genes)  IMP  
GO:0070478 [list] [network] nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay  (2 genes)  IMP  
GO:0035864 [list] [network] response to potassium ion  (7 genes)  IMP  
GO:1904278 [list] [network] positive regulation of wax biosynthetic process  (7 genes)  IGI  
GO:0006813 [list] [network] potassium ion transport  (30 genes)  IMP  
GO:0016441 [list] [network] post-transcriptional gene silencing  (105 genes)  IMP  
GO CC
GO:0055087 [list] [network] Ski complex  (2 genes)  IDA  
GO:0000325 [list] [network] plant-type vacuole  (785 genes)  HDA  
GO:0005634 [list] [network] nucleus  (10305 genes)  ISM  
GO:0005737 [list] [network] cytoplasm  (13880 genes)  IDA  
GO MF
GO:0003724 [list] [network] RNA helicase activity  (45 genes)  IMP  
KEGG ath03018 [list] [network] RNA degradation (113 genes)
Protein NP_001325878.1  NP_001325879.1  NP_190280.5 
BLAST NP_001325878.1  NP_001325879.1  NP_190280.5 
Orthologous [Ortholog page] LOC4328375 (osa)  LOC7468590 (ppo)  LOC25490766 (mtr)  LOC100788432 (gma)  LOC101264125 (sly)  LOC103873280 (bra)  LOC123132362 (tae)  LOC123136414 (tae)  LOC123404187 (hvu) 
Subcellular
localization
wolf
nucl 5,  cyto 4,  E.R. 1,  cysk 1  (predict for NP_001325878.1)
nucl 6,  cyto 3,  nucl_plas 3  (predict for NP_001325879.1)
nucl 7,  cyto 1,  chlo 1,  cysk 1,  cyto_pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for NP_190280.5)
Subcellular
localization
TargetP
other 7,  chlo 3  (predict for NP_001325878.1)
other 7,  chlo 3  (predict for NP_001325879.1)
other 7  (predict for NP_190280.5)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03013 Nucleocytoplasmic transport 2
Genes directly connected with AT3G46960 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
8.0 PKL chromatin remodeling factor CHD3 (PICKLE) [detail] 817055
7.5 AT3G19740 P-loop containing nucleoside triphosphate hydrolases superfamily protein [detail] 821511
7.3 NUA nuclear pore anchor [detail] 844268
4.4 AT1G47570 RING/U-box superfamily protein [detail] 841166
Coexpressed
gene list		 [Coexpressed gene list for AT3G46960]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
252443_at
252443_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
252443_at
252443_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
252443_at
252443_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 823849      
Refseq ID (protein) NP_001325878.1 
NP_001325879.1 
NP_190280.5 


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