ATTED-II : GeneID search result

[←][→] ath AT3G47490 Gene

functional annotation

Function

HNH endonuclease

GO BP

GO CC

GO:0005829 [list] [network] cytosol	(3506 genes)	HDA
GO:0005634 [list] [network] nucleus	(10793 genes)	ISM

GO MF

GO:0004519 [list] [network] endonuclease activity	(145 genes)	IEA
GO:0003676 [list] [network] nucleic acid binding	(4187 genes)	IEA

KEGG

Protein

NP_001190027.1 NP_001327109.1 NP_001327110.1 NP_001327111.1 NP_001327112.1 NP_190333.1 NP_974393.1

BLAST

NP_001190027.1 NP_001327109.1 NP_001327110.1 NP_001327111.1 NP_001327112.1 NP_190333.1 NP_974393.1

Orthologous

[Ortholog page] LOC4331767 (osa) LOC7491177 (ppo) LOC25493821 (mtr) LOC100262165 (vvi) LOC100382155 (zma) LOC100500174 (gma) LOC103873238 (bra) LOC112941860 (sly)

Subcellular
localization
wolf

nucl 5, mito 3, chlo 1, cyto_mito 1, mito_plas 1	(predict for NP_001190027.1)
nucl 9, cyto 1, extr 1	(predict for NP_001327109.1)
nucl 9	(predict for NP_001327110.1)
nucl 9	(predict for NP_001327111.1)
nucl 7, plas 1, chlo 1, mito 1, chlo_mito 1, golg_plas 1, cysk_plas 1, E.R._plas 1, cyto_plas 1	(predict for NP_001327112.1)
nucl 4, chlo 3, plas 2, cyto_nucl 2, cysk_nucl 2	(predict for NP_190333.1)
nucl 7, plas 1, chlo 1, mito 1, chlo_mito 1, golg_plas 1, cysk_plas 1, E.R._plas 1, cyto_plas 1	(predict for NP_974393.1)

Subcellular
localization
TargetP

chlo 8, mito 3	(predict for NP_001190027.1)
other 8	(predict for NP_001327109.1)
other 8	(predict for NP_001327110.1)
other 8	(predict for NP_001327111.1)
other 1	(predict for NP_001327112.1)
other 1	(predict for NP_190333.1)
other 1	(predict for NP_974393.1)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

Genes directly connected with AT3G47490 on the network
coex z^*	Locus	Function^*	Coexpression detail	Entrez Gene ID^*
5.0	AT2G38025	Cysteine proteinases superfamily protein	[detail]	818381
4.7	AT4G32590	2Fe-2S ferredoxin-like superfamily protein	[detail]	829394
3.8	AT5G01650	Tautomerase/MIF superfamily protein	[detail]	831707

Coexpressed
gene list

[Coexpressed gene list for AT3G47490]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

252418_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

252418_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

252418_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	823903
Refseq ID (protein)	NP_001190027.1
	NP_001327109.1
	NP_001327110.1
	NP_001327111.1
	NP_001327112.1
	NP_190333.1
	NP_974393.1

The preparation time of this page was 0.2 [sec].