[←][→] ath   At3g48250 Gene
functional annotation
Function   Pentatricopeptide repeat (PPR) superfamily protein    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:0008380 [list] [network] RNA splicing  (191 genes)  IMP  
GO CC
GO:0005739 [list] [network] mitochondrion  (4228 genes)  IDA ISM  
GO MF
KEGG
Protein NP_190408.1 
BLAST NP_190408.1 
Orthologous [Ortholog page] LOC4323841 (osa)  LOC7453806 (ppo)  LOC25493705 (mtr)  LOC25493706 (mtr)  LOC25493707 (mtr)  LOC25493709 (mtr)  LOC100801257 (gma)  LOC100815857 (gma)  LOC101244173 (sly)  LOC103873160 (bra)  LOC103873543 (bra)  LOC120580575 (mtr)  LOC123063669 (tae)  LOC123072808 (tae)  LOC123080975 (tae)  LOC123445676 (hvu) 
Subcellular
localization
wolf
chlo 9,  nucl 1,  mito 1  (predict for NP_190408.1)
Subcellular
localization
TargetP
chlo 8,  mito 7  (predict for NP_190408.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
Genes directly connected with BIR6 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
11.8 AT5G39840 ATP-dependent RNA helicase [detail] 833980
11.5 AT5G09840 Putative endonuclease or glycosyl hydrolase [detail] 830844
11.4 AT1G02370 Tetratricopeptide repeat (TPR)-like superfamily protein [detail] 837735
10.6 EMB2217 Pentatricopeptide repeat (PPR) superfamily protein [detail] 844287
9.9 EMB2794 Tetratricopeptide repeat (TPR)-like superfamily protein [detail] 814746
9.8 AT3G13150 Tetratricopeptide repeat (TPR)-like superfamily protein [detail] 820503
9.0 AT2G15690 Tetratricopeptide repeat (TPR)-like superfamily protein [detail] 816062
8.4 AT3G02490 Pentatricopeptide repeat (PPR) superfamily protein [detail] 820563
7.7 AT2G37400 Tetratricopeptide repeat (TPR)-like superfamily protein [detail] 818316
6.5 AT3G50040 uncharacterized protein [detail] 824166
Coexpressed
gene list		 [Coexpressed gene list for BIR6]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
252355_at
252355_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
252355_at
252355_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
252355_at
252355_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 823983      
Refseq ID (protein) NP_190408.1 


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