ATTED-II : GeneID search result

[←][→] ath At3g48880 Gene

functional annotation

Function

RNI-like superfamily protein

GO BP

GO:0050829 [list] [network] defense response to Gram-negative bacterium

(23 genes)

IMP

GO CC

GO MF

GO:1905761 [list] [network] SCF ubiquitin ligase complex binding	(1 genes)	IPI
GO:0005515 [list] [network] protein binding	(5066 genes)	IPI

KEGG

Protein

NP_001327846.1 NP_190457.1 NP_850671.1

BLAST

NP_001327846.1 NP_190457.1 NP_850671.1

Orthologous

[Ortholog page] LOC4349047 (osa) LOC7454486 (ppo) LOC7484395 (ppo) LOC25485083 (mtr) LOC25485084 (mtr) LOC100789355 (gma) LOC100791249 (gma) LOC101246600 (sly) LOC101247404 (sly) LOC101247698 (sly) LOC103873111 (bra) LOC103874908 (bra) LOC123047787 (tae) LOC123123262 (tae) LOC123181206 (tae) LOC123433348 (hvu)

Subcellular
localization
wolf

cyto 5, nucl 4, cysk 1, golg 1	(predict for NP_001327846.1)
cyto 5, nucl 4, cysk 1, golg 1	(predict for NP_190457.1)
cyto 5, nucl 4, cysk 1, golg 1	(predict for NP_850671.1)

Subcellular
localization
TargetP

other 9, mito 3	(predict for NP_001327846.1)
other 9, mito 3	(predict for NP_190457.1)
other 9, mito 3	(predict for NP_850671.1)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

Genes directly connected with AT3G48880 on the network
coex z^*	Locus	Function^*	CoexViewer	Entrez Gene ID^*
8.0	AT3G49800	BSD domain-containing protein	[detail]	824142
7.6	AT5G50230	Transducin/WD40 repeat-like superfamily protein	[detail]	835088
7.4	PEPKR2	phosphoenolpyruvate carboxylase-related kinase 2	[detail]	837824
5.7	AT3G11290	Myb/SANT-like DNA-binding domain protein	[detail]	820300

Coexpressed
gene list

[Coexpressed gene list for AT3G48880]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

252336_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

252336_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

252336_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	824049
Refseq ID (protein)	NP_001327846.1
	NP_190457.1
	NP_850671.1

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