| functional annotation |
| Function |
RNA-dependent RNA polymerase 6 |
|
| GO BP |
|
GO:0070919 [list] [network] production of siRNA involved in chromatin silencing by small RNA
|
(8 genes)
|
IBA
|
 |
|
GO:0009616 [list] [network] virus induced gene silencing
|
(12 genes)
|
IMP
|
|
|
GO:0010267 [list] [network] production of ta-siRNAs involved in RNA interference
|
(15 genes)
|
IMP
|
|
|
GO:0035196 [list] [network] production of miRNAs involved in gene silencing by miRNA
|
(29 genes)
|
IMP
|
|
|
GO:0030422 [list] [network] production of siRNA involved in RNA interference
|
(34 genes)
|
IBA
TAS
|
|
|
GO:0016246 [list] [network] RNA interference
|
(41 genes)
|
IMP
|
|
|
GO:0051607 [list] [network] defense response to virus
|
(44 genes)
|
IMP
|
|
|
GO:0048544 [list] [network] recognition of pollen
|
(64 genes)
|
IMP
|
|
|
GO:0048440 [list] [network] carpel development
|
(79 genes)
|
IGI
|
|
|
GO:0048467 [list] [network] gynoecium development
|
(91 genes)
|
IMP
|
|
|
GO:0016441 [list] [network] posttranscriptional gene silencing
|
(138 genes)
|
TAS
|
|
|
GO:0031047 [list] [network] gene silencing by RNA
|
(183 genes)
|
IMP
|
|
|
GO:0048366 [list] [network] leaf development
|
(338 genes)
|
IGI
|
|
|
| GO CC |
|
| GO MF |
|
GO:0003968 [list] [network] RNA-directed 5'-3' RNA polymerase activity
|
(7 genes)
|
IBA
ISS
|
|
|
GO:0003887 [list] [network] DNA-directed DNA polymerase activity
|
(16 genes)
|
IEA
|
|
|
GO:0003723 [list] [network] RNA binding
|
(1790 genes)
|
IEA
|
|
|
| KEGG |
|
|
| Protein |
NP_001327617.1
NP_001327618.1
NP_001327619.1
NP_001327620.1
NP_190519.1
|
| BLAST |
NP_001327617.1
NP_001327618.1
NP_001327619.1
NP_001327620.1
NP_190519.1
|
| Orthologous |
[Ortholog page]
LOC4323938 (osa)
LOC7468633 (ppo)
LOC11431963 (mtr)
LOC100262771 (vvi)
LOC100274261 (zma)
LOC100795178 (gma)
LOC100807347 (gma)
LOC101055593 (sly)
LOC101252013 (sly)
LOC103875370 (bra)
|
Subcellular
localization
wolf |
|
cyto 5,
nucl 3,
chlo 1,
cysk_nucl 1,
nucl_plas 1
|
(predict for NP_001327617.1)
|
|
cyto 5,
nucl 3,
chlo 1,
cysk_nucl 1,
nucl_plas 1
|
(predict for NP_001327618.1)
|
|
cyto 5,
nucl 3,
chlo 1,
cysk_nucl 1,
nucl_plas 1
|
(predict for NP_001327619.1)
|
|
cyto 5,
nucl 3,
chlo 1,
cysk_nucl 1,
nucl_plas 1
|
(predict for NP_001327620.1)
|
|
cyto 5,
nucl 3,
chlo 1,
cysk_nucl 1,
nucl_plas 1
|
(predict for NP_190519.1)
|
|
Subcellular
localization
TargetP |
|
other 8
|
(predict for NP_001327617.1)
|
|
other 8
|
(predict for NP_001327618.1)
|
|
other 8
|
(predict for NP_001327619.1)
|
|
other 8
|
(predict for NP_001327620.1)
|
|
other 8
|
(predict for NP_190519.1)
|
|
| Gene coexpression |
Network*for
coexpressed
genes |
| KEGG* ID |
Title |
#genes |
Link to the KEGG* map
(Multiple genes) |
| ath00511 |
Other glycan degradation |
2 |
 |
Genes directly connected with RDR6 on the network
| coex z* |
Locus |
Function* |
Coexpression
detail |
Entrez Gene ID* |
| 6.6 |
SPK1 |
guanyl-nucleotide exchange factors;GTPase binding;GTP binding protein |
[detail] |
827328 |
| 6.5 |
AT5G13980 |
Glycosyl hydrolase family 38 protein |
[detail] |
831246 |
| 6.0 |
emb1427 |
Spc97 / Spc98 family of spindle pole body (SBP) component |
[detail] |
844366 |
| 5.7 |
VHP2;2 |
Inorganic H pyrophosphatase family protein |
[detail] |
838249 |
| 4.9 |
SIEL |
ARM repeat superfamily protein |
[detail] |
820027 |
|
Coexpressed
gene list |
[Coexpressed gene list for RDR6]
|
| Gene expression |
| All samples |
[Expression pattern for all samples]
|
AtGenExpress*
(Development) |
252261_at
X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.
|
AtGenExpress*
(Stress) |
252261_at
X axis is samples (pdf file), and Y axis is log2-expression.
|
AtGenExpress*
(Hormone) |
252261_at
X axis is samples (xls file), and Y axis is log-expression.
|
AT3G49500 Gene
