[←][→] ath   At3g53460 Gene
functional annotation
Function   chloroplast RNA-binding protein 29    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:0043489 [list] [network] RNA stabilization  (8 genes)  IMP  
GO:0009631 [list] [network] cold acclimation  (59 genes)  IMP  
GO:0008380 [list] [network] RNA splicing  (191 genes)  IMP  
GO:0009409 [list] [network] response to cold  (472 genes)  IMP  
GO:0006396 [list] [network] RNA processing  (567 genes)  IMP  
GO CC
GO:0009534 [list] [network] chloroplast thylakoid  (415 genes)  HDA  
GO:0009579 [list] [network] thylakoid  (509 genes)  HDA IDA  
GO:0009570 [list] [network] chloroplast stroma  (705 genes)  HDA IDA  
GO:0005829 [list] [network] cytosol  (2559 genes)  HDA  
GO:0009507 [list] [network] chloroplast  (5004 genes)  HDA IDA ISM  
GO MF
GO:0008266 [list] [network] poly(U) RNA binding  (19 genes)  IDA  
GO:0003729 [list] [network] mRNA binding  (1535 genes)  HDA IDA  
GO:0003723 [list] [network] RNA binding  (1729 genes)  IDA ISS  
KEGG
Protein NP_001190078.1  NP_001190079.1  NP_190914.1  NP_850692.2 
BLAST NP_001190078.1  NP_001190079.1  NP_190914.1  NP_850692.2 
Orthologous [Ortholog page] AT2G37220 (ath)  LOC4332957 (osa)  LOC4344001 (osa)  LOC7486483 (ppo)  LOC11433272 (mtr)  LOC18100185 (ppo)  LOC100786275 (gma)  LOC100812934 (gma)  LOC101245790 (sly)  LOC101255645 (sly)  LOC103841271 (bra)  LOC103857667 (bra)  LOC103865583 (bra)  LOC103867216 (bra)  LOC123044103 (tae)  LOC123051986 (tae)  LOC123085968 (tae)  LOC123092005 (tae)  LOC123187853 (tae)  LOC123425182 (hvu)  LOC123448659 (hvu) 
Subcellular
localization
wolf
chlo 10  (predict for NP_001190078.1)
chlo 10  (predict for NP_001190079.1)
chlo 10  (predict for NP_190914.1)
chlo 10  (predict for NP_850692.2)
Subcellular
localization
TargetP
chlo 9  (predict for NP_001190078.1)
chlo 9  (predict for NP_001190079.1)
chlo 9  (predict for NP_190914.1)
chlo 9  (predict for NP_850692.2)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 2
Genes directly connected with CP29 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
12.2 AT2G37220 RNA-binding (RRM/RBD/RNP motifs) family protein [detail] 818299
10.9 PTAC6 plastid transcriptionally active 6 [detail] 838761
9.2 AT4G26370 antitermination NusB domain-containing protein [detail] 828743
5.8 AT1G49650 alpha/beta-Hydrolases superfamily protein [detail] 841389
Coexpressed
gene list		 [Coexpressed gene list for CP29]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
251956_at
251956_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
251956_at
251956_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
251956_at
251956_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 824514      
Refseq ID (protein) NP_001190078.1 
NP_001190079.1 
NP_190914.1 
NP_850692.2 


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