[←][→] ath   At3g53580 Gene
functional annotation
Function   diaminopimelate epimerase family protein    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:0009089 [list] [network] lysine biosynthetic process via diaminopimelate  (8 genes)  IEA  
GO CC
GO:0009570 [list] [network] chloroplast stroma  (705 genes)  HDA  
GO:0009507 [list] [network] chloroplast  (5004 genes)  HDA ISM  
GO MF
GO:0008837 [list] [network] diaminopimelate epimerase activity  (1 genes)  IGI  
KEGG ath00300 [list] [network] Lysine biosynthesis (15 genes)
ath00470 [list] [network] D-Amino acid metabolism (6 genes)
ath01230 [list] [network] Biosynthesis of amino acids (244 genes)
Protein NP_190926.1 
BLAST NP_190926.1 
Orthologous [Ortholog page] LOC4352558 (osa)  LOC7460375 (ppo)  LOC7487330 (ppo)  LOC25499307 (mtr)  LOC100784731 (gma)  LOC100807528 (gma)  LOC101246955 (sly)  LOC103829942 (bra)  LOC103841284 (bra)  LOC103867199 (bra)  LOC123102524 (tae)  LOC123110705 (tae)  LOC123119712 (tae)  LOC123398613 (hvu) 
Subcellular
localization
wolf
cyto 6,  chlo 2,  vacu 1,  chlo_mito 1  (predict for NP_190926.1)
Subcellular
localization
TargetP
chlo 8  (predict for NP_190926.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01230 Biosynthesis of amino acids 13
ath00300 Lysine biosynthesis 6
ath01210 2-Oxocarboxylic acid metabolism 5
ath00230 Purine metabolism 4
ath01240 Biosynthesis of cofactors 4
Genes directly connected with AT3G53580 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
7.5 ADSS adenylosuccinate synthase [detail] 824930
7.1 AT2G43090 Aconitase/3-isopropylmalate dehydratase protein [detail] 818911
6.8 AT-HF HIS HF [detail] 828797
Coexpressed
gene list		 [Coexpressed gene list for AT3G53580]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
251948_at
251948_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
251948_at
251948_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
251948_at
251948_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 824526      
Refseq ID (protein) NP_190926.1 


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