[←][→] ath   At3g54920 Gene
functional annotation
Function   Pectin lyase-like superfamily protein    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:0042547 [list] [network] cell wall modification involved in multidimensional cell growth  (11 genes)  IMP  
GO:0045490 [list] [network] pectin catabolic process  (78 genes)  IEA  
GO:0098542 [list] [network] defense response to other organism  (2060 genes)  IMP  
GO CC
GO:0005886 [list] [network] plasma membrane  (2529 genes)  ISM ISS  
GO:0016020 [list] [network] membrane  (3629 genes)  TAS  
GO MF
GO:0030570 [list] [network] pectate lyase activity  (25 genes)  ISS  
GO:0016829 [list] [network] lyase activity  (284 genes)  ISS  
KEGG ath00040 [list] [network] Pentose and glucuronate interconversions (108 genes)
Protein NP_191052.2 
BLAST NP_191052.2 
Orthologous [Ortholog page] 9612 (sly)  AT3G07010 (ath)  AT3G24230 (ath)  AT3G24670 (ath)  AT3G27400 (ath)  AT3G53190 (ath)  AT4G13210 (ath)  AT4G13710 (ath)  AT4G24780 (ath)  AT5G04310 (ath)  AT5G48900 (ath)  AT5G63180 (ath)  AT1G04680 (ath)  AT1G67750 (ath)  LOC4335013 (osa)  LOC4348800 (osa)  LOC7453817 (ppo)  LOC7458080 (ppo)  LOC7460526 (ppo)  LOC7467675 (ppo)  LOC7468445 (ppo)  LOC7469382 (ppo)  LOC7477066 (ppo)  LOC7479851 (ppo)  LOC7481246 (ppo)  LOC7488611 (ppo)  LOC7494805 (ppo)  LOC11408829 (mtr)  LOC11409358 (mtr)  LOC11411484 (mtr)  LOC11426383 (mtr)  LOC18100132 (ppo)  LOC25483116 (mtr)  LOC25483947 (mtr)  LOC25485548 (mtr)  LOC25489517 (mtr)  LOC25499338 (mtr)  LOC100101868 (gma)  LOC100775595 (gma)  LOC100779940 (gma)  LOC100781845 (gma)  LOC100782388 (gma)  LOC100787082 (gma)  LOC100789303 (gma)  LOC100790659 (gma)  LOC100794814 (gma)  LOC100808438 (gma)  LOC100809277 (gma)  LOC100810380 (gma)  LOC100814679 (gma)  LOC100815062 (gma)  LOC100816256 (gma)  LOC101244298 (sly)  LOC101252082 (sly)  PL (sly)  LOC101254639 (sly)  LOC101257697 (sly)  LOC101260911 (sly)  LOC101263458 (sly)  LOC101264881 (sly)  LOC101264933 (sly)  LOC103828610 (bra)  LOC103828688 (bra)  LOC103829999 (bra)  LOC103831011 (bra)  LOC103831201 (bra)  LOC103833411 (bra)  LOC103834896 (bra)  LOC103836561 (bra)  LOC103837270 (bra)  LOC103837461 (bra)  LOC103841243 (bra)  LOC103841403 (bra)  LOC103843635 (bra)  LOC103844229 (bra)  LOC103847312 (bra)  LOC103850282 (bra)  LOC103852424 (bra)  LOC103854567 (bra)  LOC103855563 (bra)  LOC103861505 (bra)  LOC103862557 (bra)  LOC103863605 (bra)  LOC103863641 (bra)  LOC103870710 (bra)  LOC103873738 (bra)  LOC103875221 (bra)  LOC112323533 (ppo)  LOC123043123 (tae)  LOC123044722 (tae)  LOC123051018 (tae)  LOC123119621 (tae)  LOC123180958 (tae)  LOC123186967 (tae)  LOC123430122 (hvu)  LOC123431519 (hvu) 
Subcellular
localization
wolf
vacu 4,  extr 3,  plas 1,  golg 1,  golg_plas 1  (predict for NP_191052.2)
Subcellular
localization
TargetP
scret 5  (predict for NP_191052.2)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
Genes directly connected with PMR6 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
7.4 AT1G72410 COP1-interacting protein-like protein [detail] 843573
6.9 TTL3 tetratricopetide-repeat thioredoxin-like 3 [detail] 818858
6.2 ULT1 Developmental regulator, ULTRAPETALA [detail] 828934
5.2 CSLA07 cellulose synthase like [detail] 818134
4.8 TBL39 TRICHOME BIREFRINGENCE-LIKE 39 [detail] 818857
Coexpressed
gene list		 [Coexpressed gene list for PMR6]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
251864_at
251864_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
251864_at
251864_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
251864_at
251864_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 824657      
Refseq ID (protein) NP_191052.2 


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