[←][→] ath   At3g54980 Gene
functional annotation
Function   Pentatricopeptide repeat (PPR) superfamily protein    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO CC
GO:0005739 [list] [network] mitochondrion  (4228 genes)  ISM  
GO MF
KEGG
Protein NP_001325869.1  NP_191058.1 
BLAST NP_001325869.1  NP_191058.1 
Orthologous [Ortholog page] LOJ (ath)  LOC7495762 (ppo)  LOC11443262 (mtr)  LOC100777321 (gma)  LOC101252311 (sly)  LOC103841410 (bra) 
Subcellular
localization
wolf
chlo 5,  mito 4,  cyto_mito 2  (predict for NP_001325869.1)
chlo 5,  mito 4,  cyto_mito 2  (predict for NP_191058.1)
Subcellular
localization
TargetP
mito 8  (predict for NP_001325869.1)
mito 8  (predict for NP_191058.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03020 RNA polymerase 2
Genes directly connected with AT3G54980 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
10.6 AT5G46920 Intron maturase, type II family protein [detail] 834738
10.1 AT2G31240 Tetratricopeptide repeat (TPR)-like superfamily protein [detail] 817681
7.6 AT1G04945 HIT-type Zinc finger family protein [detail] 5007664
7.5 MEF8 Tetratricopeptide repeat (TPR)-like superfamily protein [detail] 817097
7.4 AT2G34970 Trimeric LpxA-like enzyme [detail] 818061
6.9 AT1G54380 spliceosome protein-like protein [detail] 841879
6.4 AT3G04130 Tetratricopeptide repeat (TPR)-like superfamily protein [detail] 819568
6.4 AT5G04670 Enhancer of polycomb-like transcription factor protein [detail] 830344
6.1 FRS4 FAR1-related sequence 4 [detail] 843965
6.0 AT2G23520 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein [detail] 816884
5.6 THO5 THO complex, subunit 5 [detail] 841093
Coexpressed
gene list		 [Coexpressed gene list for AT3G54980]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
251841_at
251841_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
251841_at
251841_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
251841_at
251841_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 824663      
Refseq ID (protein) NP_001325869.1 
NP_191058.1 


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