[←][→] ath   AT3G55140 Gene
functional annotation
Function   Pectin lyase-like superfamily protein  
GO BP
GO CC
GO:0005576 [list] [network] extracellular region  (3363 genes)  ISM  
GO MF
GO:0016829 [list] [network] lyase activity  (412 genes)  ISS  
KEGG ath00040 [list] [network] Pentose and glucuronate interconversions (96 genes)
Protein NP_191074.2  NP_974439.1 
BLAST NP_191074.2  NP_974439.1 
Orthologous [Ortholog page] LOC4326883 (osa)  LOC7467584 (ppo)  LOC7469793 (ppo)  LOC25484083 (mtr)  LOC25485739 (mtr)  LOC100246761 (vvi)  LOC100255011 (vvi)  LOC100283618 (zma)  LOC100802068 (gma)  LOC100814368 (gma)  LOC101244802 (sly)  LOC101267397 (sly)  LOC103652411 (zma)  LOC103863187 (bra)  LOC107276207 (osa)  LOC109939990 (zma) 
Subcellular
localization
wolf
cyto 6,  nucl 1,  cysk 1,  cysk_nucl 1  (predict for NP_191074.2)
cysk 5,  cyto 4,  nucl 1,  golg 1  (predict for NP_974439.1)
Subcellular
localization
TargetP
other 6  (predict for NP_191074.2)
other 5  (predict for NP_974439.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00190 Oxidative phosphorylation 3
ath04130 SNARE interactions in vesicular transport 2
ath01200 Carbon metabolism 2
Genes directly connected with AT3G55140 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
5.1 AT4G32960 BRISC/BRCA1-A complex protein [detail] 829433
4.9 ATVPS33 Sec1/munc18-like (SM) proteins superfamily [detail] 824651
4.8 AtSec20 Sec20 family protein [detail] 822020
Coexpressed
gene list		 [Coexpressed gene list for AT3G55140]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
251831_at
251831_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
251831_at
251831_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
251831_at
251831_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 824680      
Refseq ID (protein) NP_191074.2 
NP_974439.1 


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