[←][→] ath   At3g55140 Gene
functional annotation
Function   Pectin lyase-like superfamily protein      
GO BP
GO:0045490 [list] [network] pectin catabolic process  (78 genes)  IEA  
GO CC
GO:0005576 [list] [network] extracellular region  (3154 genes)  ISM  
GO MF
GO:0030570 [list] [network] pectate lyase activity  (25 genes)  IEA  
GO:0016829 [list] [network] lyase activity  (284 genes)  ISS  
KEGG ath00040 [list] [network] Pentose and glucuronate interconversions (108 genes)
Protein NP_191074.2  NP_974439.1 
BLAST NP_191074.2  NP_974439.1 
Orthologous [Ortholog page] AT3G09540 (ath)  LOC4326883 (osa)  LOC7467584 (ppo)  LOC7469793 (ppo)  LOC7491952 (ppo)  LOC25484083 (mtr)  LOC25485739 (mtr)  LOC100799009 (gma)  LOC100802068 (gma)  LOC100814368 (gma)  LOC101244802 (sly)  LOC101267397 (sly)  LOC103863187 (bra)  LOC103870538 (bra)  LOC107276207 (osa)  LOC123043487 (tae)  LOC123051348 (tae)  LOC123058756 (tae)  LOC123065891 (tae)  LOC123074951 (tae)  LOC123424575 (hvu)  LOC123442012 (hvu) 
Subcellular
localization
wolf
cyto 6,  nucl 1,  cysk 1,  cysk_nucl 1  (predict for NP_191074.2)
cysk 5,  cyto 4,  nucl 1,  golg 1  (predict for NP_974439.1)
Subcellular
localization
TargetP
other 6  (predict for NP_191074.2)
other 5  (predict for NP_974439.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
Genes directly connected with AT3G55140 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
5.3 AT4G32960 BRISC/BRCA1-A complex protein [detail] 829433
5.0 AT5G65960 GTP binding protein [detail] 836726
5.0 HAM2 histone acetyltransferase of the MYST family 2 [detail] 830834
Coexpressed
gene list		 [Coexpressed gene list for AT3G55140]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
251831_at
251831_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
251831_at
251831_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
251831_at
251831_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 824680      
Refseq ID (protein) NP_191074.2 
NP_974439.1 


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