ATTED-II : GeneID search result

[←][→] ath At3g55770 Gene

functional annotation

Function

GATA type zinc finger transcription factor family protein

GO BP

GO:0051017 [list] [network] actin filament bundle assembly

(20 genes)

IDA

GO CC

GO:0015629 [list] [network] actin cytoskeleton	(37 genes)	IDA
GO:0005737 [list] [network] cytoplasm	(13880 genes)	ISM

GO MF

GO:0051015 [list] [network] actin filament binding	(39 genes)	IDA
GO:0003729 [list] [network] mRNA binding	(1535 genes)	HDA

KEGG

Protein

NP_001030868.1 NP_001030870.1 NP_001190099.1 NP_001319760.1 NP_001319761.1 NP_191136.1 NP_680133.2

BLAST

NP_001030868.1 NP_001030870.1 NP_001190099.1 NP_001319760.1 NP_001319761.1 NP_191136.1 NP_680133.2

Orthologous

[Ortholog page] WLIM2a (ath) PLIM2a (ath) PLIM2c (ath) PLIM2b (ath) LOC4330114 (osa) LOC4332355 (osa) LOC4336498 (osa) LOC4349048 (osa) LOC7458092 (ppo) LOC7458160 (ppo) LOC7461757 (ppo) LOC7464920 (ppo) LOC7488001 (ppo) LOC11410341 (mtr) LOC11436931 (mtr) LOC18094437 (ppo) LOC25500927 (mtr) LOC25502036 (mtr) LOC100305845 (gma) LOC100499865 (gma) LOC100779513 (gma) LOC100786139 (gma) LOC100788569 (gma) LOC100800234 (gma) LOC100807765 (gma) LOC100809121 (gma) LOC100809605 (gma) LOC101251934 (sly) LOC101253787 (sly) LOC101258156 (sly) LOC101263235 (sly) PLIM2a (sly) LOC103841485 (bra) LOC103843810 (bra) LOC103857889 (bra) LOC103862837 (bra) LOC103863136 (bra) LOC103866238 (bra) LOC103866924 (bra) LOC103867000 (bra) LOC123041649 (tae) LOC123048018 (tae) LOC123092651 (tae) LOC123097959 (tae) LOC123123253 (tae) LOC123130719 (tae) LOC123134277 (tae) LOC123141570 (tae) LOC123185718 (tae) LOC123403479 (hvu) LOC123430571 (hvu) LOC123433390 (hvu) LOC123449066 (hvu)

Subcellular
localization
wolf

chlo 4, nucl 4, mito 1	(predict for NP_001030868.1)
chlo 4, nucl 4, mito 1	(predict for NP_001030870.1)
nucl 6, mito 2, chlo 1	(predict for NP_001190099.1)
nucl 6, chlo 2, mito 1, plas 1, mito_plas 1	(predict for NP_001319760.1)
nucl 4, chlo 4, mito 1, plas 1, extr 1, mito_plas 1	(predict for NP_001319761.1)
chlo 4, nucl 4, mito 1	(predict for NP_191136.1)
chlo 4, nucl 4, mito 1	(predict for NP_680133.2)

Subcellular
localization
TargetP

other 8	(predict for NP_001030868.1)
other 8	(predict for NP_001030870.1)
other 8	(predict for NP_001190099.1)
other 8	(predict for NP_001319760.1)
other 8	(predict for NP_001319761.1)
other 8	(predict for NP_191136.1)
other 8	(predict for NP_680133.2)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04120	Ubiquitin mediated proteolysis	2

Genes directly connected with WLIM2b on the network
coex z^*	Locus	Function^*	CoexViewer	Entrez Gene ID^*
11.0	UBC10	ubiquitin-conjugating enzyme 10	[detail]	835411
10.5	ARFA1E	ADP-ribosylation factor A1E	[detail]	825402
9.8	PP2A-4	protein phosphatase 2A-4	[detail]	825019
9.4	UBC1	ubiquitin carrier protein 1	[detail]	838002
8.4	GAMMA CAL2	gamma carbonic anhydrase-like 2	[detail]	824029
7.7	AT1G06700	Protein kinase superfamily protein	[detail]	837180
7.6	AT3G01520	Adenine nucleotide alpha hydrolases-like superfamily protein	[detail]	821122
6.5	ABCI18	non-intrinsic ABC protein 4	[detail]	839378
6.3	AT2G26210	Ankyrin repeat family protein	[detail]	817161

Coexpressed
gene list

[Coexpressed gene list for WLIM2b]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

251758_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

251758_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

251758_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	824743
Refseq ID (protein)	NP_001030868.1
	NP_001030870.1
	NP_001190099.1
	NP_001319760.1
	NP_001319761.1
	NP_191136.1
	NP_680133.2

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