ATTED-II : GeneID search result

[←][→] ath At3g57410 Gene

functional annotation

Function

villin 3

GO BP

GO:0051014 [list] [network] actin filament severing	(3 genes)	IDA
GO:0051017 [list] [network] actin filament bundle assembly	(20 genes)	IDA IGI

GO CC

GO:0005884 [list] [network] actin filament	(11 genes)	IDA
GO:0005829 [list] [network] cytosol	(2559 genes)	HDA
GO:0005737 [list] [network] cytoplasm	(13880 genes)	IDA ISM

GO MF

GO:0051015 [list] [network] actin filament binding	(39 genes)	IDA IEA
GO:0003729 [list] [network] mRNA binding	(1535 genes)	IDA

KEGG

Protein

NP_001319779.1 NP_001325644.1 NP_001325645.1 NP_001325646.1 NP_001325647.1 NP_001325648.1 NP_001325649.1 NP_001325650.1 NP_001325651.1 NP_567048.1

BLAST

NP_001319779.1 NP_001325644.1 NP_001325645.1 NP_001325646.1 NP_001325647.1 NP_001325648.1 NP_001325649.1 NP_001325650.1 NP_001325651.1 NP_567048.1

Orthologous

[Ortholog page] VLN2 (ath) LOC4332869 (osa) LOC7468985 (ppo) LOC7496131 (ppo) LOC11425184 (mtr) LOC100787208 (gma) LOC100788765 (gma) LOC100803795 (gma) LOC100807846 (gma) LOC101254959 (sly) LOC101255152 (sly) LOC101268090 (sly) LOC103841646 (bra) LOC103857995 (bra) LOC103866584 (bra) LOC120580940 (mtr) LOC123080735 (tae) LOC123086053 (tae) LOC123091945 (tae) LOC123097414 (tae) LOC123445535 (hvu) LOC123448689 (hvu)

Subcellular
localization
wolf

nucl 9, cyto 1, pero 1, cyto_pero 1	(predict for NP_001319779.1)
nucl 8, cyto 1, vacu 1, cysk 1	(predict for NP_001325644.1)
nucl 9, cyto 1, pero 1, cyto_pero 1	(predict for NP_001325645.1)
nucl 9, cyto 1, pero 1, cyto_pero 1	(predict for NP_001325646.1)
nucl 9, cyto 1, pero 1, cyto_pero 1	(predict for NP_001325647.1)
nucl 9, cyto 1, pero 1, cyto_pero 1	(predict for NP_001325648.1)
nucl 9, cyto 1, pero 1, cyto_pero 1	(predict for NP_001325649.1)
nucl 9	(predict for NP_001325650.1)
nucl 9, cyto 1, pero 1, cyto_pero 1	(predict for NP_001325651.1)
nucl 9, cyto 1, pero 1, cyto_pero 1	(predict for NP_567048.1)

Subcellular
localization
TargetP

other 8	(predict for NP_001319779.1)
other 8	(predict for NP_001325644.1)
other 8	(predict for NP_001325645.1)
other 8	(predict for NP_001325646.1)
other 8	(predict for NP_001325647.1)
other 8	(predict for NP_001325648.1)
other 8	(predict for NP_001325649.1)
other 8	(predict for NP_001325650.1)
other 8	(predict for NP_001325651.1)
other 8	(predict for NP_567048.1)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04144	Endocytosis	3

Genes directly connected with VLN3 on the network
coex z^*	Locus	Function^*	CoexViewer	Entrez Gene ID^*
6.8	AT5G40450	A-kinase anchor-like protein	[detail]	834043
6.6	VLN2	villin 2	[detail]	818773
6.4	AT2G35050	kinase superfamily with octicosapeptide/Phox/Bem1p domain-containing protein	[detail]	818070

Coexpressed
gene list

[Coexpressed gene list for VLN3]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

251629_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

251629_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

251629_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	824908
Refseq ID (protein)	NP_001319779.1
	NP_001325644.1
	NP_001325645.1
	NP_001325646.1
	NP_001325647.1
	NP_001325648.1
	NP_001325649.1
	NP_001325650.1
	NP_001325651.1
	NP_567048.1

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