[←][→] ath   AT3G61490 Gene
functional annotation
Function   Pectin lyase-like superfamily protein  
GO BP
GO:0071555 [list] [network] cell wall organization  (538 genes)  IEA  
GO:0005975 [list] [network] carbohydrate metabolic process  (995 genes)  IEA  
GO CC
GO:0005576 [list] [network] extracellular region  (3363 genes)  IEA  
GO:0009507 [list] [network] chloroplast  (5095 genes)  ISM  
GO MF
GO:0004650 [list] [network] polygalacturonase activity  (52 genes)  IEA  
GO:0016829 [list] [network] lyase activity  (412 genes)  IEA  
KEGG
Protein NP_001190154.1  NP_001327412.1  NP_001327413.1  NP_191708.1  NP_974473.1 
BLAST NP_001190154.1  NP_001327412.1  NP_001327413.1  NP_191708.1  NP_974473.1 
Orthologous [Ortholog page] AT2G23900 (ath)  AT3G48950 (ath)  AT4G23500 (ath)  LOC4331458 (osa)  LOC4339868 (osa)  LOC7472748 (ppo)  LOC7494526 (ppo)  LOC7497216 (ppo)  LOC11408934 (mtr)  LOC11414847 (mtr)  LOC11420475 (mtr)  LOC11421560 (mtr)  LOC11422557 (mtr)  LOC25500842 (mtr)  LOC25502095 (mtr)  LOC100250814 (vvi)  LOC100255362 (vvi)  LOC100255958 (vvi)  LOC100262858 (vvi)  LOC100284735 (zma)  LOC100284797 (zma)  LOC100776827 (gma)  LOC100778404 (gma)  LOC100779166 (gma)  LOC100785005 (gma)  LOC100785841 (gma)  LOC100787980 (gma)  LOC100794916 (gma)  LOC100795453 (gma)  LOC100803375 (gma)  LOC100812836 (gma)  LOC100816232 (gma)  LOC100818998 (gma)  LOC100852885 (vvi)  LOC101247546 (sly)  LOC101255793 (sly)  LOC101258597 (sly)  LOC101265204 (sly)  LOC101265512 (sly)  LOC103841972 (bra)  LOC103861130 (bra)  LOC103861401 (bra)  LOC103864502 (bra)  LOC103873101 (bra) 
Subcellular
localization
wolf
vacu 3,  chlo 1,  mito 1,  extr 1,  E.R. 1,  golg 1,  chlo_mito 1  (predict for NP_001190154.1)
nucl 4,  extr 2,  cyto_nucl 2,  cysk_nucl 2  (predict for NP_001327412.1)
chlo 4,  vacu 4,  extr 1,  golg 1  (predict for NP_001327413.1)
vacu 3,  chlo 1,  mito 1,  extr 1,  E.R. 1,  golg 1,  chlo_mito 1  (predict for NP_191708.1)
vacu 3,  chlo 1,  mito 1,  extr 1,  E.R. 1,  golg 1,  chlo_mito 1  (predict for NP_974473.1)
Subcellular
localization
TargetP
scret 7  (predict for NP_001190154.1)
chlo 5  (predict for NP_001327412.1)
scret 8  (predict for NP_001327413.1)
scret 7  (predict for NP_191708.1)
scret 7  (predict for NP_974473.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
Genes directly connected with AT3G61490 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
6.7 AT5G09760 Plant invertase/pectin methylesterase inhibitor superfamily [detail] 830836
6.5 AT5G19730 Pectin lyase-like superfamily protein [detail] 832093
6.0 PIP2;5 plasma membrane intrinsic protein 2;5 [detail] 824647
5.9 AT4G23500 Pectin lyase-like superfamily protein [detail] 828450
5.5 AT1G02460 Pectin lyase-like superfamily protein [detail] 839443
4.7 AT5G55530 Calcium-dependent lipid-binding (CaLB domain) family protein [detail] 835647
3.7 AT5G28450 Chlorophyll A-B binding family protein [detail] 832932
Coexpressed
gene list		 [Coexpressed gene list for AT3G61490]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
251317_at
251317_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
251317_at
251317_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
251317_at
251317_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 825322      
Refseq ID (protein) NP_001190154.1 
NP_001327412.1 
NP_001327413.1 
NP_191708.1 
NP_974473.1 


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