ATTED-II : GeneID search result

[←][→] ath At4g02570 Gene

functional annotation

Function

cullin 1

GO BP

GO:0010265 [list] [network] SCF complex assembly	(1 genes)	IMP
GO:0042752 [list] [network] regulation of circadian rhythm	(61 genes)	IMP
GO:0009867 [list] [network] jasmonic acid mediated signaling pathway	(147 genes)	TAS
GO:0010087 [list] [network] phloem or xylem histogenesis	(158 genes)	IMP
GO:0009733 [list] [network] response to auxin	(384 genes)	IMP
GO:0048366 [list] [network] leaf development	(465 genes)	IMP
GO:0009753 [list] [network] response to jasmonic acid	(611 genes)	IMP
GO:0009793 [list] [network] embryo development ending in seed dormancy	(697 genes)	IMP

GO CC

GO:0000794 [list] [network] condensed nuclear chromosome	(13 genes)	IDA
GO:0005819 [list] [network] spindle	(53 genes)	IDA
GO:0009524 [list] [network] phragmoplast	(69 genes)	IDA
GO:0000151 [list] [network] ubiquitin ligase complex	(189 genes)	IPI
GO:0005634 [list] [network] nucleus	(10305 genes)	IDA
GO:0005737 [list] [network] cytoplasm	(13880 genes)	IDA

GO MF

GO:0005515 [list] [network] protein binding

(5066 genes)

IPI

KEGG

ath04120 [list] [network] Ubiquitin mediated proteolysis (155 genes)

ath04141 [list] [network] Protein processing in endoplasmic reticulum (215 genes)

Protein

NP_001031575.1 NP_001031576.1 NP_001190661.1 NP_567243.1

BLAST

NP_001031575.1 NP_001031576.1 NP_001190661.1 NP_567243.1

Orthologous

[Ortholog page] CUL2 (ath) AT1G43140 (ath) LOC4325735 (osa) LOC4325736 (osa) LOC4337820 (osa) LOC7475961 (ppo) LOC7479228 (ppo) LOC11425891 (mtr) LOC18094407 (ppo) LOC18101833 (ppo) LOC25488176 (mtr) LOC25494069 (mtr) LOC100778287 (gma) LOC100779134 (gma) LOC100784626 (gma) LOC100786561 (gma) LOC100793682 (gma) LOC100819650 (gma) LOC101247231 (sly) LOC101248129 (sly) LOC101248419 (sly) LOC101249757 (sly) LOC101255534 (sly) LOC103834445 (bra) LOC103836734 (bra) LOC103843729 (bra) LOC103858756 (bra) LOC123064505 (tae) LOC123073802 (tae) LOC123112630 (tae) LOC123112645 (tae) LOC123180502 (tae) LOC123180503 (tae) LOC123191196 (tae) LOC123191203 (tae) LOC123425326 (hvu) LOC123425335 (hvu) LOC123442542 (hvu)

Subcellular
localization
wolf

cyto 4, nucl 4, cysk_nucl 2, cyto_E.R. 2	(predict for NP_001031575.1)
cyto 4, nucl 4, cysk_nucl 2, cyto_E.R. 2	(predict for NP_001031576.1)
cyto 4, nucl 4, cysk_nucl 2, cyto_E.R. 2	(predict for NP_001190661.1)
cyto 4, nucl 4, cysk_nucl 2, cyto_E.R. 2	(predict for NP_567243.1)

Subcellular
localization
TargetP

other 9	(predict for NP_001031575.1)
other 9	(predict for NP_001031576.1)
other 9	(predict for NP_001190661.1)
other 9	(predict for NP_567243.1)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04120	Ubiquitin mediated proteolysis	4
ath04141	Protein processing in endoplasmic reticulum	3
ath03013	Nucleocytoplasmic transport	2
ath03420	Nucleotide excision repair	2

Genes directly connected with CUL1 on the network
coex z^*	Locus	Function^*	CoexViewer	Entrez Gene ID^*
8.0	CUL4	cullin4	[detail]	834663
7.9	UBP13	ubiquitin-specific protease 13	[detail]	820364
7.8	UBP12	ubiquitin-specific protease 12	[detail]	830548
6.9	LOS4	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[detail]	824477
5.3	WNK8	with no lysine (K) kinase 8	[detail]	834204

Coexpressed
gene list

[Coexpressed gene list for CUL1]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

255441_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

255441_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

255441_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	825648
Refseq ID (protein)	NP_001031575.1
	NP_001031576.1
	NP_001190661.1
	NP_567243.1

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