[←][→] ath   AT4G05000 Gene
functional annotation
Function   Vacuolar protein sorting-associated protein VPS28 family protein  
GO BP
GO:0043328 [list] [network] protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway  (6 genes)  IBA  
GO CC
GO:0000813 [list] [network] ESCRT I complex  (8 genes)  IBA ISS  
GO:0005829 [list] [network] cytosol  (3506 genes)  HDA  
GO:0005634 [list] [network] nucleus  (10793 genes)  ISM  
GO MF
GO:0044877 [list] [network] protein-containing complex binding  (181 genes)  IBA  
GO:0005515 [list] [network] protein binding  (4605 genes)  IPI  
KEGG ath04144 [list] [network] Endocytosis (144 genes)
Protein NP_001328317.1  NP_567281.2  NP_974513.1 
BLAST NP_001328317.1  NP_567281.2  NP_974513.1 
Orthologous [Ortholog page] VPS28-1 (ath)  LOC4327840 (osa)  LOC7494341 (ppo)  LOC11439388 (mtr)  LOC100284642 (zma)  LOC100500366 (gma)  LOC100814037 (gma)  LOC101255562 (sly)  LOC101258121 (sly)  LOC103651140 (zma)  LOC103834189 (bra)  LOC103839783 (bra)  LOC103859151 (bra) 
Subcellular
localization
wolf
nucl_plas 2,  chlo 2,  nucl 2,  cyto 2,  mito 1,  plas 1,  cyto_pero 1  (predict for NP_001328317.1)
nucl_plas 2,  chlo 2,  nucl 2,  cyto 2,  mito 1,  plas 1,  cyto_pero 1  (predict for NP_567281.2)
nucl_plas 2,  chlo 2,  nucl 2,  cyto 2,  mito 1,  plas 1,  cyto_pero 1  (predict for NP_974513.1)
Subcellular
localization
TargetP
other 9  (predict for NP_001328317.1)
other 9  (predict for NP_567281.2)
other 9  (predict for NP_974513.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
Genes directly connected with VPS28-2 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
5.6 AT1G49850 RING/U-box superfamily protein [detail] 841408
5.6 BPC4 basic pentacysteine 4 [detail] 816663
5.5 AT1G76185 NADH-ubiquinone oxidoreductase chain [detail] 843951
Coexpressed
gene list		 [Coexpressed gene list for VPS28-2]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
255253_at
255253_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
255253_at
255253_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
255253_at
255253_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 825842      
Refseq ID (protein) NP_001328317.1 
NP_567281.2 
NP_974513.1 


The preparation time of this page was 1.6 [sec].