ATTED-II : GeneID search result

[←][→] ath AT4G09040 Gene

functional annotation

Function

RNA-binding (RRM/RBD/RNP motifs) family protein

GO BP

GO CC

GO:0009570 [list] [network] chloroplast stroma	(750 genes)	IDA
GO:0009507 [list] [network] chloroplast	(5095 genes)	HDA IDA ISM
GO:0005634 [list] [network] nucleus	(10793 genes)	ISM

GO MF

GO:0003729 [list] [network] mRNA binding

(1026 genes)

IDA

KEGG

Protein

NP_001078360.1 NP_192643.2

BLAST

NP_001078360.1 NP_192643.2

Orthologous

[Ortholog page] LOC4345863 (osa) LOC7486573 (ppo) LOC11431177 (mtr) LOC100248931 (vvi) LOC100283883 (zma) LOC100790439 (gma) LOC100806480 (gma) LOC101266507 (sly) LOC103838830 (bra)

Subcellular
localization
wolf

chlo 6, nucl 3, mito 1, cyto_nucl 1, cysk_nucl 1, nucl_plas 1	(predict for NP_001078360.1)
chlo 7, nucl 2	(predict for NP_192643.2)

Subcellular
localization
TargetP

chlo 5, mito 4	(predict for NP_001078360.1)
chlo 8	(predict for NP_192643.2)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

Genes directly connected with AT4G09040 on the network
coex z^*	Locus	Function^*	Coexpression detail	Entrez Gene ID^*
10.9	AT2G39670	Radical SAM superfamily protein	[detail]	818550
9.6	RIF10	polyribonucleotide nucleotidyltransferase	[detail]	821181
8.9	AT5G11480	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[detail]	831019
8.7	AT4G37510	Ribonuclease III family protein	[detail]	829906

Coexpressed
gene list

[Coexpressed gene list for AT4G09040]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

255071_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

255071_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

255071_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	826483
Refseq ID (protein)	NP_001078360.1
Refseq ID (protein)	NP_192643.2

The preparation time of this page was 0.1 [sec].