[←][→] ath   At4g11820 Gene
functional annotation
Function   hydroxymethylglutaryl-CoA synthase / HMG-CoA synthase / 3-hydroxy-3-methylglutaryl coenzyme A synthase    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:0019287 [list] [network] isopentenyl diphosphate biosynthetic process, mevalonate pathway  (7 genes)  TAS  
GO CC
GO:0009506 [list] [network] plasmodesma  (871 genes)  HDA  
GO:0005739 [list] [network] mitochondrion  (4228 genes)  ISM  
GO MF
GO:0004421 [list] [network] hydroxymethylglutaryl-CoA synthase activity  (1 genes)  IGI ISS  
GO:0003985 [list] [network] acetyl-CoA C-acetyltransferase activity  (3 genes)  IGI  
KEGG ath00280 [list] [network] Valine, leucine and isoleucine degradation (52 genes)
ath00650 [list] [network] Butanoate metabolism (20 genes)
ath00900 [list] [network] Terpenoid backbone biosynthesis (61 genes)
Protein NP_001319906.1  NP_192919.1  NP_849361.1 
BLAST NP_001319906.1  NP_192919.1  NP_849361.1 
Orthologous [Ortholog page] LOC4346215 (osa)  LOC4347614 (osa)  LOC7478083 (ppo)  LOC7479248 (ppo)  LOC11429131 (mtr)  LOC11438999 (mtr)  HMGS2 (sly)  LOC100777679 (gma)  LOC100780554 (gma)  LOC100782595 (gma)  LOC100788028 (gma)  LOC100794889 (gma)  HMGS1 (sly)  HMGS4 (sly)  LOC103828819 (bra)  LOC103853500 (bra)  LOC123152308 (tae)  LOC123165539 (tae)  LOC123407244 (hvu) 
Subcellular
localization
wolf
cyto 5,  cysk 3,  nucl 1,  cysk_plas 1  (predict for NP_001319906.1)
cyto 6,  chlo 3,  cyto_nucl 3,  cyto_pero 3,  cyto_E.R. 3,  cyto_plas 3  (predict for NP_192919.1)
cyto 5,  cysk 3,  nucl 1,  cysk_plas 1  (predict for NP_849361.1)
Subcellular
localization
TargetP
other 8  (predict for NP_001319906.1)
other 7,  scret 5  (predict for NP_192919.1)
other 8  (predict for NP_849361.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00010 Glycolysis / Gluconeogenesis 9
ath01200 Carbon metabolism 9
ath00620 Pyruvate metabolism 6
ath01230 Biosynthesis of amino acids 4
ath00900 Terpenoid backbone biosynthesis 4
Genes directly connected with HMGS on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
8.3 ACAT2 acetoacetyl-CoA thiolase 2 [detail] 834876
5.7 MVD1 mevalonate diphosphate decarboxylase 1 [detail] 818452
5.0 AT1G76550 Phosphofructokinase family protein [detail] 843988
Coexpressed
gene list		 [Coexpressed gene list for HMGS]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
254845_at
254845_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
254845_at
254845_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
254845_at
254845_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 826788      
Refseq ID (protein) NP_001319906.1 
NP_192919.1 
NP_849361.1 


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