[←][→] ath   At4g17610 Gene
functional annotation
Function   tRNA/rRNA methyltransferase (SpoU) family protein    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:0030488 [list] [network] tRNA methylation  (9 genes)  IEA  
GO:0001510 [list] [network] RNA methylation  (28 genes)  ISS  
GO:1903046 [list] [network] meiotic cell cycle process  (255 genes)  IEA  
GO:0051301 [list] [network] cell division  (442 genes)  IEA  
GO:0048522 [list] [network] positive regulation of cellular process  (856 genes)  IEA  
GO:0048316 [list] [network] seed development  (1294 genes)  IEA  
GO:0048367 [list] [network] shoot system development  (1318 genes)  IEA  
GO:0044085 [list] [network] cellular component biogenesis  (1358 genes)  IEA  
GO CC
GO:0009507 [list] [network] chloroplast  (5004 genes)  ISM  
GO MF
GO:0016423 [list] [network] tRNA (guanine) methyltransferase activity  (3 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (1729 genes)  IEA  
KEGG
Protein NP_001319976.1  NP_001329531.1  NP_001329532.1 
BLAST NP_001319976.1  NP_001329531.1  NP_001329532.1 
Orthologous [Ortholog page] LOC4331280 (osa)  LOC18094554 (ppo)  LOC25493589 (mtr)  LOC100809637 (gma)  LOC101255721 (sly)  LOC103855553 (bra)  LOC123093975 (tae)  LOC123099174 (tae)  LOC123106138 (tae)  LOC123450087 (hvu) 
Subcellular
localization
wolf
vacu 3,  nucl 2,  plas 1,  golg 1,  golg_plas 1  (predict for NP_001319976.1)
vacu 3,  nucl 2,  plas 1,  golg 1,  golg_plas 1  (predict for NP_001329531.1)
vacu 3,  nucl 2,  plas 1,  golg 1,  golg_plas 1  (predict for NP_001329532.1)
Subcellular
localization
TargetP
scret 6  (predict for NP_001319976.1)
scret 6  (predict for NP_001329531.1)
scret 6  (predict for NP_001329532.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03013 Nucleocytoplasmic transport 5
ath03008 Ribosome biogenesis in eukaryotes 2
ath03015 mRNA surveillance pathway 2
ath04120 Ubiquitin mediated proteolysis 2
Genes directly connected with AT4G17610 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
8.3 EMB2788 ribosome 60S biogenesis amino-terminal protein [detail] 828809
7.6 SAR1 SUPPRESSOR OF AUXIN RESISTANCE1 [detail] 840234
7.2 NRPC2 nuclear RNA polymerase C2 [detail] 834550
7.0 APC4 Transducin/WD40 repeat-like superfamily protein [detail] 828238
Coexpressed
gene list		 [Coexpressed gene list for AT4G17610]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
245404_at
245404_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
245404_at
245404_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
245404_at
245404_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 827480      
Refseq ID (protein) NP_001319976.1 
NP_001329531.1 
NP_001329532.1 


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