| functional annotation |
| Function |
Transcription factor TFIIE, alpha subunit |
|
| GO BP |
|
GO:0001113 [list] [network] transcriptional open complex formation at RNA polymerase II promoter
|
(3 genes)
|
IBA
|
 |
|
| GO CC |
|
GO:0005673 [list] [network] transcription factor TFIIE complex
|
(5 genes)
|
IBA
|
|
|
GO:0005634 [list] [network] nucleus
|
(10793 genes)
|
ISM
|
|
|
| GO MF |
|
GO:0001097 [list] [network] TFIIH-class transcription factor complex binding
|
(5 genes)
|
IBA
|
|
|
GO:0000993 [list] [network] RNA polymerase II complex binding
|
(18 genes)
|
IBA
|
|
|
| KEGG |
ath03022 [list] [network] Basal transcription factors (55 genes) |
 |
| Protein |
NP_001329830.1
NP_001329831.1
NP_193767.2
|
| BLAST |
NP_001329830.1
NP_001329831.1
NP_193767.2
|
| Orthologous |
[Ortholog page]
AT1G03280 (ath)
LOC4345330 (osa)
LOC7462650 (ppo)
LOC11408174 (mtr)
LOC100263299 (vvi)
LOC100273074 (zma)
LOC100273603 (zma)
LOC100779773 (gma)
LOC100793678 (gma)
LOC100799341 (gma)
LOC100810405 (gma)
LOC101258739 (sly)
LOC103844523 (bra)
|
Subcellular
localization
wolf |
|
cyto 4,
chlo 4,
nucl 1
|
(predict for NP_001329830.1)
|
|
nucl 4,
cyto 2,
chlo 1,
cyto_plas 1
|
(predict for NP_001329831.1)
|
|
cyto 4,
chlo 4,
nucl 1
|
(predict for NP_193767.2)
|
|
Subcellular
localization
TargetP |
|
scret 7,
other 3
|
(predict for NP_001329830.1)
|
|
other 6,
mito 5
|
(predict for NP_001329831.1)
|
|
scret 7,
other 3
|
(predict for NP_193767.2)
|
|
| Gene coexpression |
Network*for
coexpressed
genes |
| KEGG* ID |
Title |
#genes |
Link to the KEGG* map
(Multiple genes) |
| ath03008 |
Ribosome biogenesis in eukaryotes |
2 |
 |
| ath03040 |
Spliceosome |
2 |
 |
Genes directly connected with AT4G20340 on the network
| coex z* |
Locus |
Function* |
Coexpression
detail |
Entrez Gene ID* |
| 6.0 |
CPL4 |
C-terminal domain phosphatase-like 4 |
[detail] |
5008312 |
| 5.7 |
AT5G38720 |
ribosomal RNA-processing 7 protein |
[detail] |
833863 |
| 5.6 |
TAF15 |
TBP-associated factor 15 |
[detail] |
841452 |
| 4.1 |
AT4G20350 |
oxidoreductase |
[detail] |
827783 |
|
Coexpressed
gene list |
[Coexpressed gene list for AT4G20340]
|
| Gene expression |
| All samples |
[Expression pattern for all samples]
|
AT4G20340 Gene
