ATTED-II : GeneID search result

[←][→] ath AT4G23980 Gene

functional annotation

Function

auxin response factor 9

GO BP

GO:0009734 [list] [network] auxin-activated signaling pathway	(196 genes)	IEA
GO:0006355 [list] [network] regulation of transcription, DNA-templated	(1984 genes)	IEA TAS

GO CC

GO:0005634 [list] [network] nucleus

(10793 genes)

IEA ISM

GO MF

GO:0044212 [list] [network] transcription regulatory region DNA binding	(871 genes)	IPI
GO:0003700 [list] [network] DNA-binding transcription factor activity	(1599 genes)	ISS
GO:0005515 [list] [network] protein binding	(4605 genes)	IPI

KEGG

Protein

NP_001031706.1 NP_194129.1

BLAST

NP_001031706.1 NP_194129.1

Orthologous

[Ortholog page] ARF11 (ath) ARF18 (ath) LOC11412612 (mtr) LOC25498520 (mtr) LOC25500666 (mtr) LOC100247833 (vvi) LOC100265555 (vvi) ARF9 (sly) ARF12 (sly) LOC100779003 (gma) LOC100790981 (gma) LOC100795763 (gma) LOC100803911 (gma) LOC100820503 (gma) ARF18 (sly) ARF18-1 (bra) ARF9-2 (bra) ARF9-1 (bra) ARF18-2 (bra) ARF11 (bra)

Subcellular
localization
wolf

nucl 9	(predict for NP_001031706.1)
nucl 9, cyto 1, golg 1	(predict for NP_194129.1)

Subcellular
localization
TargetP

other 7	(predict for NP_001031706.1)
other 7	(predict for NP_194129.1)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

Genes directly connected with ARF9 on the network
coex z^*	Locus	Function^*	Coexpression detail	Entrez Gene ID^*
5.5	AT3G28690	Protein kinase superfamily protein	[detail]	822499
4.4	FC1	serine/threonine-protein kinase AFC1	[detail]	824525
4.2	IQD14	IQ-domain 14	[detail]	818970

Coexpressed
gene list

[Coexpressed gene list for ARF9]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

254194_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

254194_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

254194_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	828498
Refseq ID (protein)	NP_001031706.1
Refseq ID (protein)	NP_194129.1

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