ATTED-II : GeneID search result

[←][→] ath At4g24740 Gene

functional annotation

Function

LAMMER-type protein kinase AFC2

GO BP

GO:0046777 [list] [network] protein autophosphorylation	(121 genes)	HDA
GO:0006397 [list] [network] mRNA processing	(183 genes)	IDA

GO CC

GO:0005739 [list] [network] mitochondrion	(4228 genes)	ISM
GO:0005634 [list] [network] nucleus	(10305 genes)	ISM
GO:0005737 [list] [network] cytoplasm	(13880 genes)	ISM

GO MF

GO:0004674 [list] [network] protein serine/threonine kinase activity	(454 genes)	HDA
GO:0004672 [list] [network] protein kinase activity	(768 genes)	IDA
GO:0005515 [list] [network] protein binding	(5066 genes)	IPI

KEGG

Protein

NP_001329102.1 NP_001329103.1 NP_001329104.1 NP_001329105.1 NP_001329106.1 NP_001329107.1 NP_001329108.1 NP_001329109.1 NP_194205.1 NP_974610.1

BLAST

NP_001329102.1 NP_001329103.1 NP_001329104.1 NP_001329105.1 NP_001329106.1 NP_001329107.1 NP_001329108.1 NP_001329109.1 NP_194205.1 NP_974610.1

Orthologous

[Ortholog page] FC1 (ath) LOC4327372 (osa) LOC4352182 (osa) LOC7453810 (ppo) LOC7458074 (ppo) LOC7460740 (ppo) LOC7467581 (ppo) LOC7492257 (ppo) LOC11415007 (mtr) LOC11417641 (mtr) LOC25493694 (mtr) LOC100791858 (gma) LOC100804022 (gma) LOC100804452 (gma) LOC100808061 (gma) LOC100808961 (gma) LOC101247203 (sly) LOC101247525 (sly) LOC103829941 (bra) LOC103841283 (bra) LOC103862510 (bra) LOC123104871 (tae) LOC123113157 (tae) LOC123122677 (tae) LOC123127595 (tae) LOC123127876 (tae) LOC123137332 (tae) LOC123137766 (tae) LOC123144697 (tae) LOC123144968 (tae) LOC123401130 (hvu) LOC123401228 (hvu) LOC123452063 (hvu)

Subcellular
localization
wolf

cyto 6, nucl 2, chlo 1, cysk_plas 1	(predict for NP_001329102.1)
cyto 6, nucl 2, vacu 1, nucl_plas 1	(predict for NP_001329103.1)
cyto 6, nucl 2, extr 1, cysk_nucl 1	(predict for NP_001329104.1)
cyto 6, nucl 2, extr 1, cysk 1	(predict for NP_001329105.1)
nucl 3, cyto 3, cyto_nucl 3, cysk 2, nucl_plas 2, cyto_plas 2	(predict for NP_001329106.1)
cyto 5, nucl 4	(predict for NP_001329107.1)
cyto 6, nucl 2, chlo 1, cysk_plas 1	(predict for NP_001329108.1)
cyto 6, nucl 2, extr 1, cysk 1	(predict for NP_001329109.1)
nucl 5, cyto 4, plas 1, cysk 1, cysk_plas 1	(predict for NP_194205.1)
cyto 6, nucl 2, extr 1, cysk 1	(predict for NP_974610.1)

Subcellular
localization
TargetP

other 8	(predict for NP_001329102.1)
other 7	(predict for NP_001329103.1)
other 9	(predict for NP_001329104.1)
other 9	(predict for NP_001329105.1)
chlo 7, scret 3	(predict for NP_001329106.1)
other 7	(predict for NP_001329107.1)
other 8	(predict for NP_001329108.1)
other 9	(predict for NP_001329109.1)
other 7	(predict for NP_194205.1)
other 9	(predict for NP_974610.1)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03015	mRNA surveillance pathway	2

Genes directly connected with FC2 on the network
coex z^*	Locus	Function^*	Coexpression detail	Entrez Gene ID^*
6.8	MEE13	myosin heavy chain-like protein	[detail]	815956
6.8	AT4G36960	RNA-binding (RRM/RBD/RNP motifs) family protein	[detail]	829850
6.6	AME3	Protein kinase superfamily protein	[detail]	829401
5.8	AT1G66260	RNA-binding (RRM/RBD/RNP motifs) family protein	[detail]	842943

Coexpressed
gene list

[Coexpressed gene list for FC2]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

254131_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

254131_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

254131_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	828576
Refseq ID (protein)	NP_001329102.1
	NP_001329103.1
	NP_001329104.1
	NP_001329105.1
	NP_001329106.1
	NP_001329107.1
	NP_001329108.1
	NP_001329109.1
	NP_194205.1
	NP_974610.1

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