ATTED-II : GeneID search result

[←][→] ath AT4G28680 Gene

functional annotation

Function

L-tyrosine decarboxylase

GO BP

GO:1901695 [list] [network] tyramine biosynthetic process	(1 genes)	IMP
GO:0009611 [list] [network] response to wounding	(212 genes)	IEP
GO:0009414 [list] [network] response to water deprivation	(361 genes)	IEP
GO:0006520 [list] [network] cellular amino acid metabolic process	(369 genes)	IEA

GO CC

GO:0005634 [list] [network] nucleus	(10793 genes)	ISM
GO:0005737 [list] [network] cytoplasm	(14855 genes)	IDA ISM

GO MF

GO:0004058 [list] [network] aromatic-L-amino-acid decarboxylase activity	(1 genes)	IDA
GO:0004837 [list] [network] tyrosine decarboxylase activity	(2 genes)	IDA IEA
GO:0030170 [list] [network] pyridoxal phosphate binding	(84 genes)	IEA

KEGG

ath00350 [list] [network] Tyrosine metabolism (40 genes)

ath00950 [list] [network] Isoquinoline alkaloid biosynthesis (22 genes)

Protein

NP_001078461.1 NP_001190861.1 NP_001190862.1 NP_001329472.1 NP_001329473.1 NP_001329474.1 NP_194597.1

BLAST

NP_001078461.1 NP_001190861.1 NP_001190862.1 NP_001329472.1 NP_001329473.1 NP_001329474.1 NP_194597.1

Orthologous

[Ortholog page] AAS (ath) LOC4325604 (osa) LOC4343080 (osa) LOC4348505 (osa) LOC4348564 (osa) LOC7459533 (ppo) LOC7490797 (ppo) LOC11419480 (mtr) LOC11423672 (mtr) LOC11423811 (mtr) LOC25486293 (mtr) LOC25486294 (mtr) LOC100240846 (vvi) LOC100251450 (vvi) LOC100254909 (vvi) LOC100263224 (vvi) LOC100266935 (vvi) LOC100274380 (zma) LOC100285936 (zma) LOC100787822 (gma) LOC100791074 (gma) LOC100795274 (gma) LOC100802993 (gma) LOC101244707 (sly) LOC101251901 (sly) LOC101263431 (sly) LOC101266606 (sly) LOC103631817 (zma) LOC103828182 (bra) LOC103828183 (bra) LOC103838003 (bra) LOC103842606 (bra) LOC103854232 (bra)

Subcellular
localization
wolf

chlo 2, E.R. 2, plas 1, vacu 1, chlo_mito 1, cyto_E.R. 1	(predict for NP_001078461.1)
chlo 3, E.R. 2, plas 1, vacu 1, cyto_E.R. 1	(predict for NP_001190861.1)
chlo 3, plas 2, E.R. 1, mito_plas 1, cyto_plas 1, nucl 1, cysk_nucl 1, golg_plas 1, E.R._vacu 1, cyto_E.R. 1	(predict for NP_001190862.1)
chlo 3, plas 2, cyto 1, E.R. 1, nucl_plas 1, mito_plas 1, cyto_E.R. 1	(predict for NP_001329472.1)
chlo 3, plas 2, E.R. 1, mito_plas 1, cyto_plas 1, nucl 1, cysk_nucl 1, golg_plas 1, E.R._vacu 1, cyto_E.R. 1	(predict for NP_001329473.1)
chlo 3, plas 2, nucl 1, cyto_plas 1, cyto 1, chlo_mito 1, cysk_nucl 1, E.R._plas 1	(predict for NP_001329474.1)
chlo 2, E.R. 2, plas 1, vacu 1, chlo_mito 1, cyto_E.R. 1	(predict for NP_194597.1)

Subcellular
localization
TargetP

other 8	(predict for NP_001078461.1)
other 8	(predict for NP_001190861.1)
other 9	(predict for NP_001190862.1)
other 9	(predict for NP_001329472.1)
other 9	(predict for NP_001329473.1)
other 9	(predict for NP_001329474.1)
other 8	(predict for NP_194597.1)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

Genes directly connected with TYRDC on the network
coex z^*	Locus	Function^*	Coexpression detail	Entrez Gene ID^*
10.4	AT3G05600	alpha/beta-Hydrolases superfamily protein	[detail]	819726
8.8	PEL3	HXXXD-type acyl-transferase family protein	[detail]	832459
8.0	CYP77B1	cytochrome P450, family 77, subfamily B, polypeptide 1	[detail]	837704
5.2	AT5G45960	GDSL-like Lipase/Acylhydrolase superfamily protein	[detail]	834636
4.1	OFP18	ovate family protein 18	[detail]	824420

Coexpressed
gene list

[Coexpressed gene list for TYRDC]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

253788_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

253788_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

253788_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	828986
Refseq ID (protein)	NP_001078461.1
	NP_001190861.1
	NP_001190862.1
	NP_001329472.1
	NP_001329473.1
	NP_001329474.1
	NP_194597.1

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