[←][→] ath   At4g30220 Gene
functional annotation
Function   small nuclear ribonucleoprotein F    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO:0000387 [list] [network] spliceosomal snRNP assembly  (6 genes)  IEA  
GO CC
GO:0005730 [list] [network] nucleolus  (387 genes)  HDA  
GO:0005886 [list] [network] plasma membrane  (2529 genes)  HDA  
GO:0005634 [list] [network] nucleus  (10305 genes)  ISM  
GO MF
KEGG ath03040 [list] [network] Spliceosome (203 genes)
Protein NP_001190872.1  NP_194751.1 
BLAST NP_001190872.1  NP_194751.1 
Orthologous [Ortholog page] LOC4328484 (osa)  LOC4351052 (osa)  LOC7461580 (ppo)  LOC11428365 (mtr)  LOC100305783 (gma)  LOC100499965 (gma)  LOC101260491 (sly)  LOC103834683 (bra)  LOC103861944 (bra)  LOC123144104 (tae)  LOC123149369 (tae)  LOC123161594 (tae)  LOC123168768 (tae)  LOC123411396 (hvu) 
Subcellular
localization
wolf
chlo 4,  cyto 4,  extr 3  (predict for NP_001190872.1)
cyto 6,  cyto_nucl 5,  chlo 1,  nucl 1,  extr 1  (predict for NP_194751.1)
Subcellular
localization
TargetP
other 5,  scret 3  (predict for NP_001190872.1)
other 8  (predict for NP_194751.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 8
ath03010 Ribosome 4
ath03018 RNA degradation 2
ath03020 RNA polymerase 2
Genes directly connected with RUXF on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
10.1 AT1G29250 Alba DNA/RNA-binding protein [detail] 839799
10.1 NRPB12 DNA directed RNA polymerase, 7 kDa subunit [detail] 834103
9.9 TOM5 mitochondrial import receptor subunit TOM5-like protein [detail] 830698
9.5 NRPB10 RNA polymerases N / 8 kDa subunit [detail] 837690
8.0 AT4G30330 Small nuclear ribonucleoprotein family protein [detail] 829156
7.9 LSM8 Small nuclear ribonucleoprotein family protein [detail] 842881
7.4 AT3G62840 Small nuclear ribonucleoprotein family protein [detail] 825459
6.8 LSM6B Small nuclear ribonucleoprotein family protein [detail] 818985
Coexpressed
gene list		 [Coexpressed gene list for RUXF]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
253668_at
253668_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
253668_at
253668_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
253668_at
253668_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 829145      
Refseq ID (protein) NP_001190872.1 
NP_194751.1 


The preparation time of this page was 0.5 [sec].