ATTED-II : GeneID search result

[←][→] ath At4g30860 Gene

functional annotation

Function

SET domain group 4

Plant GARDEN Plant GARDEN JBrowse

GO BP

GO CC

GO:0000785 [list] [network] chromatin	(135 genes)	IDA
GO:0005634 [list] [network] nucleus	(10305 genes)	IDA ISM

GO MF

GO:0042054 [list] [network] histone methyltransferase activity	(26 genes)	IDA
GO:0005515 [list] [network] protein binding	(5066 genes)	IPI

KEGG

Protein

NP_567859.1

BLAST

NP_567859.1

Orthologous

[Ortholog page] LOC4329956 (osa) LOC7489421 (ppo) LOC25480139 (mtr) LOC100791481 (gma) LOC101249099 (sly) LOC103834651 (bra) LOC123127677 (tae) LOC123137444 (tae) LOC123144789 (tae) LOC123401143 (hvu)

Subcellular
localization
wolf

nucl 7, cysk 1, chlo 1, plas 1

(predict for NP_567859.1)

Subcellular
localization
TargetP

scret 5

(predict for NP_567859.1)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03430	Mismatch repair	3
ath03440	Homologous recombination	3
ath03030	DNA replication	3
ath03420	Nucleotide excision repair	2

Genes directly connected with SDG4 on the network
coex z^*	Locus	Function^*	Coexpression detail	Entrez Gene ID^*
11.2	BARD1	breast cancer associated RING 1	[detail]	839329
10.8	AT3G02820	zinc knuckle (CCHC-type) family protein	[detail]	821018
10.6	AT3G54750	downstream neighbor of Son	[detail]	824640

Coexpressed
gene list

[Coexpressed gene list for SDG4]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

253599_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

253599_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

253599_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	829210
Refseq ID (protein)	NP_567859.1

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