[←][→] ath   At4g32520 Gene
functional annotation
Function   serine hydroxymethyltransferase 3    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO CC
GO:0009570 [list] [network] chloroplast stroma  (705 genes)  HDA  
GO:0005886 [list] [network] plasma membrane  (2529 genes)  HDA  
GO:0005829 [list] [network] cytosol  (2559 genes)  RCA  
GO:0009507 [list] [network] chloroplast  (5004 genes)  HDA IDA  
GO:0009536 [list] [network] plastid  (5425 genes)  IDA  
GO:0005737 [list] [network] cytoplasm  (13880 genes)  ISM  
GO MF
GO:0004372 [list] [network] glycine hydroxymethyltransferase activity  (3 genes)  IDA  
KEGG ath00260 [list] [network] Glycine, serine and threonine metabolism (70 genes)
ath00460 [list] [network] Cyanoamino acid metabolism (71 genes)
ath00630 [list] [network] Glyoxylate and dicarboxylate metabolism (78 genes)
ath00670 [list] [network] One carbon pool by folate (21 genes)
ath01200 [list] [network] Carbon metabolism (273 genes)
ath01230 [list] [network] Biosynthesis of amino acids (244 genes)
ath01240 [list] [network] Biosynthesis of cofactors (236 genes)
Protein NP_001119098.1  NP_567895.1 
BLAST NP_001119098.1  NP_567895.1 
Orthologous [Ortholog page] LOC7462269 (ppo)  LOC11445860 (mtr)  LOC100305381 (gma)  LOC101263138 (sly)  LOC101267301 (sly)  LOC103834557 (bra)  LOC103850860 (bra) 
Subcellular
localization
wolf
chlo 9  (predict for NP_001119098.1)
chlo 9  (predict for NP_567895.1)
Subcellular
localization
TargetP
chlo 8  (predict for NP_001119098.1)
chlo 8  (predict for NP_567895.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01230 Biosynthesis of amino acids 10
ath00300 Lysine biosynthesis 5
ath01210 2-Oxocarboxylic acid metabolism 4
ath03013 Nucleocytoplasmic transport 3
ath00260 Glycine, serine and threonine metabolism 3
Genes directly connected with SHM3 on the network
coex z* Locus Function* CoexViewer Entrez Gene ID*
9.3 SKB1 SHK1 binding protein 1 [detail] 829240
9.1 ADSS adenylosuccinate synthase [detail] 824930
8.9 AT3G14390 Pyridoxal-dependent decarboxylase family protein [detail] 820660
7.8 PUR7 purin 7 [detail] 821663
Coexpressed
gene list		 [Coexpressed gene list for SHM3]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
253438_at
253438_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
253438_at
253438_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
253438_at
253438_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 829387      
Refseq ID (protein) NP_001119098.1 
NP_567895.1 


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