[←][→] ath   At4g35570 Gene
functional annotation
Function   high mobility group B5    Plant GARDEN Plant GARDEN JBrowse
GO BP
GO CC
GO:0000785 [list] [network] chromatin  (135 genes)  TAS  
GO:0005829 [list] [network] cytosol  (2559 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10305 genes)  IDA ISM  
GO:0005737 [list] [network] cytoplasm  (13880 genes)  IDA  
GO MF
GO:0030527 [list] [network] structural constituent of chromatin  (16 genes)  TAS  
GO:0003682 [list] [network] chromatin binding  (105 genes)  TAS  
GO:0003677 [list] [network] DNA binding  (1277 genes)  IDA ISS  
GO:0003700 [list] [network] DNA-binding transcription factor activity  (1576 genes)  ISS  
KEGG
Protein NP_001329802.1  NP_195282.1 
BLAST NP_001329802.1  NP_195282.1 
Orthologous [Ortholog page] LOC547975 (gma)  HMGB4 (ath)  HMGB2 (ath)  HMGB3 (ath)  LOC4347789 (osa)  LOC7480462 (ppo)  LOC7494705 (ppo)  LOC7496853 (ppo)  LOC11407325 (mtr)  LOC25490320 (mtr)  LOC25501590 (mtr)  LOC100305957 (gma)  LOC100500173 (gma)  LOC101257131 (sly)  LOC101264099 (sly)  LOC103829416 (bra)  LOC103835781 (bra)  LOC103837811 (bra)  LOC103845936 (bra)  LOC103862419 (bra)  LOC103872857 (bra)  LOC123067823 (tae)  LOC123104735 (tae)  LOC123113020 (tae)  LOC123122536 (tae)  LOC123397883 (hvu) 
Subcellular
localization
wolf
nucl 8,  extr 1  (predict for NP_001329802.1)
nucl 8,  extr 1  (predict for NP_195282.1)
Subcellular
localization
TargetP
other 9  (predict for NP_001329802.1)
other 9  (predict for NP_195282.1)
Gene coexpression
Network*for
coexpressed
genes
LCNloc
[Cytoscape]
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 4
ath03020 RNA polymerase 3
ath03018 RNA degradation 2
Genes directly connected with HMGB5 on the network
coex z* Locus Function* Coexpression
detail		 Entrez Gene ID*
9.0 AT2G18740 Small nuclear ribonucleoprotein family protein [detail] 816389
8.6 PFD6 prefoldin 6 [detail] 839878
7.5 NRPB4 RNA polymerase II, Rpb4, core protein [detail] 830853
7.1 HMGB4 high mobility group B4 [detail] 816263
5.5 KIWI ssDNA-binding transcriptional regulator [detail] 830784
Coexpressed
gene list		 [Coexpressed gene list for HMGB5]
Gene expression
All samples [Expression pattern for all samples]
AtGenExpress*
(Development)
253159_at
253159_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress*
(Stress)
253159_at
253159_at.png

X axis is samples (pdf file), and Y axis is log2-expression.
AtGenExpress*
(Hormone)
253159_at
253159_at.png

X axis is samples (xls file), and Y axis is log-expression.
Link to other DBs
Entrez Gene ID 829709      
Refseq ID (protein) NP_001329802.1 
NP_195282.1 


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