ATTED-II : GeneID search result

[←][→] ath At4g36020 Gene

functional annotation

Function

cold shock domain protein 1

GO BP

GO:0010501 [list] [network] RNA secondary structure unwinding	(2 genes)	IDA
GO:0032508 [list] [network] DNA duplex unwinding	(16 genes)	IDA
GO:0009631 [list] [network] cold acclimation	(59 genes)	IGI
GO:0009409 [list] [network] response to cold	(472 genes)	IEP IGI
GO:0009651 [list] [network] response to salt stress	(607 genes)	IEP
GO:0009414 [list] [network] response to water deprivation	(1006 genes)	IEP

GO CC

GO:0005886 [list] [network] plasma membrane	(2529 genes)	HDA
GO:0005634 [list] [network] nucleus	(10305 genes)	ISS
GO:0005737 [list] [network] cytoplasm	(13880 genes)	ISS

GO MF

GO:0003697 [list] [network] single-stranded DNA binding	(37 genes)	IDA
GO:0008270 [list] [network] zinc ion binding	(429 genes)	IEA
GO:0003690 [list] [network] double-stranded DNA binding	(789 genes)	IDA
GO:0003729 [list] [network] mRNA binding	(1535 genes)	HDA IDA
GO:0003723 [list] [network] RNA binding	(1729 genes)	IDA
GO:0003676 [list] [network] nucleic acid binding	(3100 genes)	IEA

KEGG

Protein

NP_001320149.1 NP_001329650.1 NP_195326.1

BLAST

NP_001320149.1 NP_001329650.1 NP_195326.1

Orthologous

[Ortholog page] LOC542791 (tae) LOC542810 (tae) LOC542811 (tae) GRP2B (ath) GRP2 (ath) LOC4328119 (osa) LOC4344581 (osa) LOC7463174 (ppo) LOC7469135 (ppo) LOC7470385 (ppo) LOC7494260 (ppo) LOC18099183 (ppo) LOC18101089 (ppo) LOC100795875 (gma) LOC100799708 (gma) LOC100806783 (gma) LOC100815731 (gma) LOC100815773 (gma) LOC100820359 (gma) LOC101245525 (sly) LOC101249407 (sly) LOC101259298 (sly) LOC101259590 (sly) LOC101261566 (sly) LOC103829064 (bra) LOC103835399 (bra) LOC103842561 (bra) LOC103862450 (bra) LOC103864242 (bra) LOC103871381 (bra) LOC106796585 (gma) LOC112417509 (mtr) LOC112421289 (mtr) LOC123048890 (tae) LOC123056303 (tae) LOC123133629 (tae) LOC123135879 (tae) LOC123143396 (tae) LOC123187761 (tae) LOC123403118 (hvu) LOC123425052 (hvu) LOC123442785 (hvu) LOC123442792 (hvu) LOC123450400 (hvu)

Subcellular
localization
wolf

nucl 4, chlo 2, nucl_plas 2, cyto 1, mito 1	(predict for NP_001320149.1)
nucl 6, chlo 1, cyto 1, mito 1, chlo_mito 1	(predict for NP_001329650.1)
nucl 4, chlo 2, nucl_plas 2, cyto 1, mito 1	(predict for NP_195326.1)

Subcellular
localization
TargetP

other 8	(predict for NP_001320149.1)
other 8	(predict for NP_001329650.1)
other 8	(predict for NP_195326.1)

Gene coexpression

Network^*for
coexpressed
genes

[Cytoscape]

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	5
ath03015	mRNA surveillance pathway	4

Genes directly connected with CSDP1 on the network
coex z^*	Locus	Function^*	CoexViewer	Entrez Gene ID^*
10.9	CSP3	cold shock domain protein 3	[detail]	816297
8.3	AT4G38710	glycine-rich protein	[detail]	830027
7.9	eIFiso4G2	MIF4G domain-containing protein / MA3 domain-containing protein	[detail]	816939
7.5	ASE2	GLN phosphoribosyl pyrophosphate amidotransferase 2	[detail]	829626
5.4	AT2G39020	Acyl-CoA N-acyltransferases (NAT) superfamily protein	[detail]	818488

Coexpressed
gene list

[Coexpressed gene list for CSDP1]

Gene expression

All samples

[Expression pattern for all samples]

AtGenExpress^*
(Development)

253129_at

X axis is samples (pdf file), and Y axis is log2-expression.
"1st Q", "mean" and "3rd Q" indecate the values for all genes on a GeneChip. Q: quartile.

AtGenExpress^*
(Stress)

253129_at

X axis is samples (pdf file), and Y axis is log2-expression.

AtGenExpress^*
(Hormone)

253129_at

X axis is samples (xls file), and Y axis is log-expression.

Link to other DBs
Entrez Gene ID	829758
Refseq ID (protein)	NP_001320149.1
	NP_001329650.1
	NP_195326.1

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